Workflow Type: Galaxy
Open
Frozen
tutorial
Associated Tutorial
This workflows is part of the tutorial Intro to Genome Assembly, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Simon Gladman
Inputs
ID | Name | Description | Type |
---|---|---|---|
mutant_R1.fastq | #main/mutant_R1.fastq | n/a |
|
mutant_R2.fastq | #main/mutant_R2.fastq | n/a |
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wildtype.fna | #main/wildtype.fna | n/a |
|
Steps
ID | Name | Description |
---|---|---|
3 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
4 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
5 | FASTQ interlacer | toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_interlacer/fastq_paired_end_interlacer/1.2.0.1+galaxy0 |
6 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7 |
7 | velveth | toolshed.g2.bx.psu.edu/repos/devteam/velvet/velveth/1.2.10.1 |
8 | velvetg | toolshed.g2.bx.psu.edu/repos/devteam/velvet/velvetg/1.2.10.1 |
9 | Quast | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy0 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
fastqc_html | #main/fastqc_html | n/a |
|
fastqc_txt | #main/fastqc_txt | n/a |
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multiqc_report | #main/multiqc_report | n/a |
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multiqc_stats | #main/multiqc_stats | n/a |
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output_pairs | #main/output_pairs | n/a |
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output_singles | #main/output_singles | n/a |
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quast_report_html | #main/quast_report_html | n/a |
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quast_report_pdf | #main/quast_report_pdf | n/a |
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velvet_contigs | #main/velvet_contigs | n/a |
|
velvet_stats | #main/velvet_stats | n/a |
|
velveth_out | #main/velveth_out | n/a |
|
Version History
5.0 (latest) Created 16th Jul 2024 at 14:09 by Helena Rasche
Added/updated 4 files
Open
master
62dd91f
6.0 (earliest) Created 25th Jun 2024 at 11:08 by Helena Rasche
Added/updated 4 files
Frozen
6.0
b071117
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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Discussion Channel
Activity
Views: 199 Downloads: 79
Created: 25th Jun 2024 at 11:08
Last updated: 25th Jun 2024 at 11:08
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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