ProteoRE ProteomeAnnotation Tutorial (release 2.0)
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Workflow Type: Galaxy

Annotating a protein list identified by LC-MS/MS experiments

Associated Tutorial

This workflows is part of the tutorial ProteoRE ProteomeAnnotation Tutorial (release 2.0), available in the GTN

Tutorial Author(s): Valentin Loux, Florence Combes, David Christiany, Yves Vandenbrouck

SEEK ID: https://dev.workflowhub.eu/workflows/1209?version=1

ID	Name	Description	Type
Bredberg.txt	Bredberg.txt	n/a	File
Lacombe_et_al_2017.txt	Lacombe_et_al_2017.txt	n/a	File
Mucilli.txt	Mucilli.txt	n/a	File

ID	Name	Description
10	View proteins on Reactome maps	toolshed.g2.bx.psu.edu/repos/proteore/proteore_reactome/reactome_analysis/2018.12.12
11	GO terms classification and enrichment analysis	toolshed.g2.bx.psu.edu/repos/proteore/proteore_clusterprofiler/cluter_profiler/2019.02.18
3	Build a lung proteome (as a background )	toolshed.g2.bx.psu.edu/repos/proteore/proteore_tissue_specific_expression_data/retrieve_from_hpa/2019.02.27
4	Filter technical contaminants	toolshed.g2.bx.psu.edu/repos/proteore/proteore_filter_keywords_values/MQoutputfilter/2019.03.11
5	ID Converter	toolshed.g2.bx.psu.edu/repos/proteore/proteore_id_converter/IDconverter/2019.03.07
6	ID mapping UniProt <-> ENSG ID	toolshed.g2.bx.psu.edu/repos/proteore/proteore_id_converter/IDconverter/2019.03.07
7	MS/MS datasets comparison	toolshed.g2.bx.psu.edu/repos/proteore/proteore_venn_diagram/Jvenn/2019.02.21
8	Add expression data	toolshed.g2.bx.psu.edu/repos/proteore/proteore_expression_rnaseq_abbased/rna_abbased_data/2019.03.07
9	Filter biological contaminants	toolshed.g2.bx.psu.edu/repos/proteore/proteore_filter_keywords_values/MQoutputfilter/2019.03.11

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Created: 25th Jun 2024 at 11:10

Last updated: 25th Jun 2024 at 11:10