VariantCaller_GATK3.6
Version 1

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SEEK ID: https://dev.workflowhub.eu/workflows/127?version=1

Steps

ID Name Description
0 cutadapt toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.6
1 BWA-MEM -> BAM toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1
2 picard-MarkDuplicates picard-MarkDuplicates
3 gatk-RealignerTargetCreator gatk-RealignerTargetCreator
4 gatk-IndelRealigner gatk-IndelRealigner
5 gatk-BaseRecalibrator gatk-BaseRecalibrator
6 gatk-PrintReads gatk-PrintReads
7 gatk-HaplotypeCaller gatk-HaplotypeCaller

Outputs

ID Name Description Type
_anonymous_output_1 _anonymous_output_1 n/a
  • File

Version History

Version 1 (earliest) Created 23rd Jul 2020 at 11:21 by Laura Rodriguez-Navas

Added/updated 1 files


Open master e438ba9
help Creators and Submitter
Creators
Not specified
Additional credit

Giacomo Tartari

Submitter
License
Apache License 2.0
Activity

Views: 1927   Downloads: 329

Created: 23rd Jul 2020 at 11:21

Last updated: 23rd Jul 2020 at 11:22

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Total size: 18.5 KB
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