Teams: Not specified
Organizations: Not specifiedhttps://orcid.org/0000-0002-5865-8994
Head of Bioinformatics Group, Center for Proteomics and Metabolomics, Leiden University Medical Center Interested in workflows and automated workflow composition for analysis of mass spectrometry data, in particular within proteomics or metabolomics, integration with genomics data and the scientific literature
Teams: Seven Bridges Open Workflows
Organizations: Seven Bridgeshttps://orcid.org/0000-0003-2933-1260
I have a computer science background and I work in bioinformatics. I am interested in structural variant calling.
Assembly, binning and annotation of metagenomes.
This pipeline is for assembly, binning and annotation of metagenomes. It supports both short and long reads, quality trims the reads and adapters with https://github.com/OpenGene/fastp and https://github.com/rrwick/Porechop and performs basic QC with https://www.bioinformatics.babraham.ac.uk/projects/fastqc/.
The pipeline then:
Creator: No author provided
Submitter: Finn Bacall