RaceID Workflow
1.0

Workflow Type: Galaxy

Downstream Single-cell RNA analysis with RaceID

Associated Tutorial

This workflows is part of the tutorial RaceID Workflow, available in the GTN

Thanks to...

Tutorial Author(s): Mehmet Tekman, Alex Ostrovsky

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
Tabular Matrix #main/Tabular Matrix n/a
  • File

Steps

ID Name Description
1 Initial processing using RaceID raceid_filtnormconf
2 Clustering using RaceID raceid_clustering
3 Lineage computation using StemID raceid_trajectory
4 Cluster Inspection using RaceID raceid_inspectclusters
5 Cluster Inspection using RaceID raceid_inspectclusters
6 Cluster Inspection using RaceID raceid_inspectclusters
7 Lineage Branch Analysis using StemID raceid_inspecttrajectory
8 Lineage Branch Analysis using StemID raceid_inspecttrajectory

Outputs

ID Name Description Type
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_11 #main/_anonymous_output_11 n/a
  • File
_anonymous_output_12 #main/_anonymous_output_12 n/a
  • File
_anonymous_output_13 #main/_anonymous_output_13 n/a
  • File
_anonymous_output_14 #main/_anonymous_output_14 n/a
  • File
_anonymous_output_15 #main/_anonymous_output_15 n/a
  • File
_anonymous_output_16 #main/_anonymous_output_16 n/a
  • File
_anonymous_output_17 #main/_anonymous_output_17 n/a
  • File
_anonymous_output_18 #main/_anonymous_output_18 n/a
  • File
_anonymous_output_19 #main/_anonymous_output_19 n/a
  • File
_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File
_anonymous_output_20 #main/_anonymous_output_20 n/a
  • File
_anonymous_output_21 #main/_anonymous_output_21 n/a
  • File
_anonymous_output_22 #main/_anonymous_output_22 n/a
  • File
_anonymous_output_23 #main/_anonymous_output_23 n/a
  • File
_anonymous_output_3 #main/_anonymous_output_3 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
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_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

1.0 (earliest) Created 25th Jun 2024 at 11:10 by Helena Rasche

Added/updated 4 files


Open master c62970d
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Views: 228   Downloads: 62

Created: 25th Jun 2024 at 11:09

Last updated: 25th Jun 2024 at 11:10

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