metaQuantome_datacreation_workflow 13.0
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Download RO-Cratemetaquantome-data-creation
Associated Tutorial
This workflows is part of the tutorial metaQuantome 1: Data creation, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Subina Mehta, Timothy J. Griffin, Pratik Jagtap, Emma Leith, Marie Crane
Steps
| ID | Name | Description |
|---|---|---|
| 3 | mzml to mgf | toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert/msconvert/3.0.19052.0 |
| 4 | Search GUI | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.10.1 |
| 5 | Peptide Shaker | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36.3 |
| 6 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3 |
| 7 | Remove beginning | Remove beginning1 |
| 8 | Unipept_lca | toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.0.0 |
| 9 | FlashLFQ | toolshed.g2.bx.psu.edu/repos/galaxyp/flashlfq/flashlfq/1.0.3.0 |
| 10 | Unipept_peptinfo | toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.5.0 |
| 11 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2 |
| 12 | Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.0 |
| 13 | selecting EC column | Cut1 |
| 14 | filter 5% (All_funct) | toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0 |
| 15 | GO_EC | toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0 |
| 16 | GO_BP | Filter1 |
| 17 | GO_CC | Filter1 |
| 18 | GO_MF | Filter1 |
Version History
13.0 (earliest) Created 26th Jun 2024 at 14:54 by Helena Rasche
Added/updated 4 files
Open
master73490d2
Creators and Submitter
Views: 441 Downloads: 138
Created: 26th Jun 2024 at 14:54
Tags AttributionsNone
Related items
https://orcid.org/0000-0001-9760-8992
Teams: Testing, Finn's test team, PNDB, LifeMonitorDev, iPC: individualizedPaediatricCure, test, Test Team, Australian BioCommons Dev, opscientia, V-pipe, UX study leave, DALiuGE workflows, Team1, UX study, My Fancy Team, Team UX Study11, My team, ux study team, UX study koehorst, Team Koehorst, UX Study (satra), Steve's UX Study Test Team, TestSaandra, KJ-workflow-test, NewTeam, team, UXStudy, A Team, UX study K, UXStudy99, Study team, Another new team, UX study2, Team 20220225, my new team, UX Study AU, Testing_proteomics, A test space (KKH), Pleiade, QSM4SENIOR, IGG-Bioinfo, Defragmentation training school, FWCC-D@HZDR, Submission Tutorial, Testing team, Galaxy Training Network, Exploring SEEK SOP functionality, MyTest, Tsinghua University BCI group, Test Team Number Nine, Eli's test team, EMBL Bioimage analysis service, Hu's Test
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