Calculating diversity from microbiome taxonomic data 1.0
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Download RO-CrateCalculating diversity from bracken output
Associated Tutorial
This workflows is part of the tutorial Calculating α and β diversity from microbiome taxonomic data, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Paul Zierep, Sophia Hampe, Bérénice Batut
Tutorial Author(s): Sophia Hampe, Bérénice Batut, Paul Zierep
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Input Dataset Collection | #main/Input Dataset Collection | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
| 2 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
| 3 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
| 4 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
| 5 | Krakentools: Calculates alpha diversity | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_alpha_diversity/krakentools_alpha_diversity/1.2+galaxy1 |
| 6 | Krakentools: calculates beta diversity (Bray-Curtis dissimilarity) | toolshed.g2.bx.psu.edu/repos/iuc/krakentools_beta_diversity/krakentools_beta_diversity/1.2+galaxy1 |
Version History
1.0 (earliest) Created 12th Aug 2024 at 14:04 by Helena Rasche
Added/updated 4 files
Open
master593643b
Creators and Submitter
Views: 345 Downloads: 102
Created: 12th Aug 2024 at 14:04
Last updated: 12th Aug 2024 at 14:04
AttributionsNone
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https://orcid.org/0000-0001-9760-8992
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