WF1_Database_Generation_Workflow
1.0

Visit source

Workflow Type: Galaxy

Generating a large database and then reducing it to a compact database using Metanovo

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteiomics 1: Database-Generation, available in the GTN

Workflow Author(s): Subina Mehta

Tutorial Author(s): Subina Mehta, Katherine Do, Dechen Bhuming

Tutorial Contributor(s): Pratik Jagtap, Timothy J. Griffin

SEEK ID: https://dev.workflowhub.eu/workflows/1350?version=1

ID	Name	Description	Type
Contaminants (cRAP) Protein Database	#main/Contaminants (cRAP) Protein Database	n/a	File
HUMAN SwissProt Protein Database	#main/HUMAN SwissProt Protein Database	n/a	File
Input MGF files (Dataset Collection)	#main/Input MGF files (Dataset Collection)	n/a	array containing File
Species_UniProt_FASTA	#main/Species_UniProt_FASTA	n/a	File

ID	Name	Description
4	Human UniProt Microbial Proteins cRAP for MetaNovo	toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.2.0
5	MetaNovo	toolshed.g2.bx.psu.edu/repos/galaxyp/metanovo/metanovo/1.9.4+galaxy4
6	FASTA Merge Files and Filter Unique Sequences	toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.2.0

ID	Name	Description	Type
Human UniProt Microbial Proteins (from MetaNovo) and cRAP	#main/Human UniProt Microbial Proteins (from MetaNovo) and cRAP	n/a	File
Human UniProt Microbial Proteins cRAP for MetaNovo	#main/Human UniProt Microbial Proteins cRAP for MetaNovo	n/a	File
_anonymous_output_1	#main/_anonymous_output_1	n/a	File
_anonymous_output_2	#main/_anonymous_output_2	n/a	File

Added/updated 4 files

Open master 4932cdb

Creators and Submitter

Not specified

Tool

License

Activity

Views: 323 Downloads: 88

Created: 12th Aug 2024 at 14:05

Last updated: 12th Aug 2024 at 14:05