Genome Assembly of MRSA using Illumina MiSeq Data
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/776?version=1

Inputs

ID Name Description Type
DRR187559_1 DRR187559_1 n/a
  • File
DRR187559_2 DRR187559_2 n/a
  • File

Steps

ID Name Description
2 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0
3 fastp toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0
4 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0
5 Shovill toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.1.0+galaxy2
6 Quast toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1
7 Bandage Image toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4
8 Bandage Info toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/2022.09+galaxy2

Outputs

ID Name Description Type
fastp_json fastp_json n/a
  • File
shovill_log shovill_log n/a
  • File
quast_output quast_output n/a
  • File
bandage_info_output bandage_info_output n/a
  • File

Version History

7 (earliest) Created 22nd Apr 2024 at 10:27 by Helena Rasche

Added/updated 3 files


Open master 3987d72
help Creators and Submitter
Creators
  • Bazante Sanders
  • Bérénice Batut
Submitter
Tools
FastQC
fastp
shovill
QUAST
Bandage
License
MIT License
Activity

Views: 39

Created: 22nd Apr 2024 at 10:27

Last updated: 22nd Apr 2024 at 10:27

help Attributions

None

Total size: 22.3 KB
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