Workflows
What is a Workflow?Filters
Nucleoli segmentation and feature extraction using CellProfiler
Associated Tutorial
This workflows is part of the tutorial CP_pipeline_IDR_training, available in the GTN
Thanks to...
Tutorial Author(s): Beatriz Serrano-Solano, [Jean-Karim ...
This workflow creates an ESet object from scRNA metadata file and EBI SCXA retrieveal
Associated Tutorial
This workflows is part of the tutorial MuSiC-Deconvolution: Data generation | sc | matrix + ESet, available in the GTN
Features
- Uses subworkflows ...
Visualization of Climate Data using NetCDF Xarray Map Plotting
Associated Tutorial
This workflows is part of the tutorial Xarray_Map_Plotting_Workflow, available in the GTN
Thanks to...
Tutorial Author(s): Soumya Jha
Workflow Author(s): Soumya Jha ...
Workflow based on clustering 3K PBMCs with Scanpy tutorial
Associated Tutorial
This workflows is part of the tutorial Clustering 3k PBMC with Scanpy, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): ...
Associated Tutorial
This workflows is part of the tutorial Workflow constructed from Tutorial 'Introduction to image analysis using Galaxy', available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): [Thomas ...
This workflow generates from only an EBI SCXA reference the metadata for creating an ESet object
Associated Tutorial
This workflows is part of the tutorial MuSiC-Deconvolution: Data generation | sc | metadata, available in the GTN
Thanks to...
Tutorial Author(s): Wendi Bacon, ...
Compute indicators for Champs blocs
Associated Tutorial
This workflows is part of the tutorial Champs blocs indicators, available in the GTN
Thanks to...
Tutorial Author(s): Marie Josse, Yvan Le Bras ...