Workflows
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Tool
FastQC42
MultiQC27
SAMtools21
Cutadapt16
Bowtie 214
ggplot213
scikit-learn13
BWA12
Galactic Circos12
SCANPY12
Bandage11
BEDTools11
fastp11
JBrowse11
mothur11
QUAST11
BUSCO9
DeepTools9
BamTools8
FreeBayes8
seqtk8
Trimmomatic8
HISAT27
kraken27
Minimap27
NanoPlot7
BCFtools6
FeatureCounts6
MACS6
RSeQC6
STAR6
taxonomy_krona_chart6
Trim Galore6
DESeq25
DropletUtils5
Flye5
GEMINI5
Open Babel5
annotatemyids4
BLAST4
bx-python4
gffread4
MaxQuant4
MEGAHIT4
msConvert4
MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
Salmon4
SRA Software Toolkit4
Stacks4
StringTie4
Unicycler4
Biopython3
Bwa-mem23
Cardinal3
Clustal 2 (Clustal W, Clustal X)3
COMBAT-TB Workbench3
GenomeScope 2.03
GOseq3
Gromacs3
HUMAnN23
Merqury3
MetaPhlAn3
MSstatsTMT3
Newick Utilities3
Prokka3
pyGenomeTracks3
Racon3
snippy3
Bakta2
Bio3D2
BioRuby2
Bracken2
CellProfiler2
ChEMBL2
chemfp2
compute_sequence_length2
cshl_fastx_reverse_complement2
Diamond2
eggNOG-mapper v22
epiScanpy2
funannotate2
Galaxy Image Analysis2
gffcompare2
humann2
InterProScan (EBI)2
KrakenTools2
limma2
lofreq2
MAKER2
MDAnalysis2
Medaka2
metaQuantome2
metaspades2
NGSUtils2
The Protein Data Bank (PDB)2
QIIME2
R2
RDKit2
RepeatMasker2
scikit-image2
SeqCode2
snpEff2
staramr2
tb-profiler2
tbl2gff32
UMI-tools2
Unipept2
UniProt2
Vcflib2
Workflow4Metabolomics2
xcms2
ABRicate1
AmberTools1
antiSMASH1
Apollo1
AUGUSTUS1
bed to protein map1
blockbuster1
Bowtie1
ChemicalToolbox1
ChIPpeakAnno1
ChiRA1
Circos1
Clair31
clusterProfiler1
customProDB1
diaPASEF1
EGA1
EGSEA1
European Nucleotide Archive (ENA)1
ewastools1
export2graphlan1
FastTree1
FASTX-Toolkit1
FEELnc1
fgsea1
Filtlong1
FlashLFQ1
FREEC1
GAEVAL1
Galaxy1
GATK1
GECKO1
gfastats1
GOEnrichment1
GraPhlAn1
Heinz1
HiCExplorer1
Integron Finder1
ISEScan1
IsoformSwitchAnalyzeR1
IWTomics1
Krona1
LASTZ1
MAFFT1
MAGeCK1
MALDIquant1
Matchms1
MEME1
MethylDackel1
miniasm1
miRDeep21
MLST1
MSstats1
mzToSQLite1
NCBI Resources1
Nextflow1
OBITools1
pangolin1
pathview1
Peakachu1
PfamScan1
pilon1
PlasFlow1
PlasmidFinder1
Polypolish1
Proteinortho1
purge_dups1
PYLFIRE1
pymethylprocess1
RAMClustR1
RapidNJ1
RAxML1
RCAS1
Recentrifuge1
RED1
RIAssigner1
rnaQUAST1
SALSA1
scater1
shovill1
Smudgeplots1
SNAP1
SortMeRNA1
SPAdes1
SuCOS1
Targetfinder.org1
TransDecoder1
TRANSIT1
Trinity1
Trinotate1
VarScan1
VelvetOptimiser1
WoLF PSORT1
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Workflow type
Galaxy328
Nextflow96
Common Workflow Language32
COMPSs20
Snakemake4
Jupyter1
KNIME1
My type1
Taverna1
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Tag
Proteomics32
Transcriptomics28
nf-core22
covid-1919
microbiome19
assembly18
ecology17
genome-annotation15
variant-analysis15
statistics14
name:transcriptomics12
visualisation12
computational-chemistry10
covid19.galaxyproject.org10
epigenetics9
ml9
name:singlecell9
galaxy-interface8
introduction8
LG-WF8
name:training8
cancer6
nanopore6
UX6
climate5
genome-assembly5
GTN5
metagenomics5
pediatric5
SARS-CoV-25
single-cell5
ARTIC4
Cheminformatics4
evolution4
HiFi4
Metabolomics4
name:BY-COVID4
name:scRNA-seq4
sequence-analysis4
synthetic-biology4
variant-calling4
cat3
earth-system3
fastq3
genome_assembly3
hifiasm3
imaging3
name:trajectory_analysis3
Ocean3
Pangeo3
rna3
rna-seq3
annotation2
CellProfiler2
classification2
contributing2
cosifer2
dna2
microgalaxy2
name:single-cell2
ONT2
test2
10x1
16s1
adna1
alignment1
amplicon-sequencing1
ancientdna1
arabidopsis1
asaim1
atac-seq1
ATACseq1
b-cell1
bacterial-genomes1
big-data1
binning1
Bioinformatics1
bisulfite-sequencing1
cage1
cage-seq1
cageseq-data1
chip1
chip-seq1
chromatin-accessibiity1
chromatin-immunoprecipitation1
clinical1
clustering1
community-detection1
copernicus1
covd-191
covid191
crispr1
crispr-cas91
data-independent-proteomics1
deep-variant1
deeplearning1
denovo1
denovo-assembly1
dia-proteomics1
dna-methylation1
emergen_validated1
example1
Expospomics1
fnn1
GC-MS1
gene-expression1
Genomics1
geosciences1
google1
guide-seq1
hCNV1
hla1
hla-typing1
hybrid-assembly1
immcantation1
immune1
immunology1
introductions1
Isoseq1
iwc1
iwtomics1
k-mer1
kmer1
kmer-counting1
kmer-frequency-count1
macs21
Marineomics1
mass-spectrometry1
MaxQuant1
methyl-seq1
MIRACUM1
mirna1
moleculardynamics1
name:alternative_splicing1
name:circos1
name:data-management1
name:deconvolution1
name:GTN1
name:single_cell1
name:viz1
nanopore-sequencing1
networks1
ngs-pipeline1
NormalyzerDE1
optitype1
PacBio1
pathogen-genomics1
peak-calling1
peptides1
personalized-medicine1
population-genetics1
prokaryote1
PubMed1
PubTator1
purge_dups1
qiime1
regression1
RetroPath1
reverse1
rrna1
samtools1
screening1
SDRF1
sempi31
shotgun-ms1
text-mining1
variant-annotation1
vgp1
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Submitter
Helena Rasche284
WorkflowHub Sandbox Bot69
Finn Bacall53
Raül Sirvent17
Stian Soiland-Reyes15
Laura Rodriguez-Navas12
Simone Leo10
Jane Doe10
Ignacio Eguinoa8
Douglas Lowe6
Bert Droesbeke3
Johan Gustafsson3
Robin Long2
Kiran K Telukunta1
Kaushik Ghose1
Stuart Owen1
Hervé Ménager1
Alban Gaignard1
Luca Pireddu1
JEAN-MARIE BUREL1
Kim Philipp Jablonski1
Alexandra Has1
Paolo Uva1
Nandan Deshpande1
Terry Bertozzi1
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Team
Galaxy Training Network284
nf-core86
Testing53
VIB-ELIXIR-BE12
Workflow Hub Administration11
MGnify9
LifeMonitorDev9
Galaxy COVID-198
iPC: individualizedPaediatricCure5
Australian BioCommons Dev5
IWC Workflows4
Demonstrator #73
My team3
UX study leave2
UX study koehorst2
Seven Bridges Open Workflows1
test1
V-pipe1
Team11
ux study team1
UXStudy1
Testing_proteomics1
IGG-Bioinfo1
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Space
General370
504
Workflows visible to you, out of a total of 599