Workflows

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577 Workflows visible to you, out of a total of 682
Preprocessing of 10X scRNA-seq data

Associated Tutorial

This workflows is part of the tutorial Pre-processing of 10X Single-Cell RNA Datasets, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: Helena Rasche

Clustering 3k PBMC with Scanpy

Workflow based on clustering 3K PBMCs with Scanpy tutorial

Associated Tutorial

This workflows is part of the tutorial Clustering 3K PBMCs with Scanpy, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: Helena Rasche

End-to-end EI+ mass spectra prediction workflow using QCxMS

This workflow predict in-silico mass spectra using semi-empirical quantum physics method.

Associated Tutorial

This workflows is part of the tutorial Predicting EI+ mass spectra with QCxMS, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: Helena Rasche

Workflow for Identifying MF from ITS2 sequencing using LotuS2 - tutorial example run'

Workflow for running LotuS2 tool on fungal ITS paired-end sequencing data, to identify the fungi present in the samples

Associated Tutorial

This workflows is part of the tutorial Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2, available in the GTN

Features

  • Includes [Galaxy Workflow ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

GO Enrichment Workflow

Associated Tutorial

This workflows is part of the tutorial GO Enrichment Analysis on Single-Cell RNA-Seq Data, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: Helena Rasche

Nuclei segmentation and shape measurement
Stable

Detecting a set of objects in an image, counting them and measuring certain characteristics about their morphology is probably the most frequently occurring task in bioimage analysis. Depending on the image, even this task could become quite challenging and the workflow could become quite complex. Here we start with a relatively simple image where combining a minimal set of image analysis components into a simple workflow does the job.

Type: Galaxy

Creator: yi.sun@embl.de

Submitter: yi.sun@embl.de

GTN_differential_isoform_expression

Analyze differential isoform expression

Associated Tutorial

This workflows is part of the tutorial Genome-wide alternative splicing analysis, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: Helena Rasche

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