Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Pre-processing of 10X Single-Cell RNA Datasets, available in the GTN

Features

Thanks to...

Workflow Author(s): Wendi Bacon, Pavankumar Videm, Mehmet Tekman, Hans-Rudolf Hotz, Daniel Blankenberg

Tutorial Author(s): Mehmet Tekman, Hans-Rudolf Hotz, Daniel Blankenberg, Wendi Bacon, Pavankumar Videm

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
3M-february-2018.txt.gz 3M-february-2018.txt.gz n/a
  • File
Homo_sapiens.GRCh37.75.gtf Homo_sapiens.GRCh37.75.gtf n/a
  • File
subset_pbmc_1k_v3_S1_L001_R1_001.fastq.gz subset_pbmc_1k_v3_S1_L001_R1_001.fastq.gz n/a
  • File
subset_pbmc_1k_v3_S1_L001_R2_001.fastq.gz subset_pbmc_1k_v3_S1_L001_R2_001.fastq.gz n/a
  • File
subset_pbmc_1k_v3_S1_L002_R1_001.fastq.gz subset_pbmc_1k_v3_S1_L002_R1_001.fastq.gz n/a
  • File
subset_pbmc_1k_v3_S1_L002_R2_001.fastq.gz subset_pbmc_1k_v3_S1_L002_R2_001.fastq.gz n/a
  • File

Steps

ID Name Description
6 RNA STARSolo toolshed.g2.bx.psu.edu/repos/iuc/rna_starsolo/rna_starsolo/2.7.10b+galaxy3
7 DropletUtils toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.10.0+galaxy2
8 DropletUtils toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.10.0+galaxy2
9 DropletUtils toolshed.g2.bx.psu.edu/repos/iuc/dropletutils/dropletutils/1.10.0+galaxy2

Version History

2.0 (latest) Created 7th Oct 2024 at 14:09 by Helena Rasche

Added/updated 4 files


Open master 5dd16a9

1.0 Created 16th Jul 2024 at 14:11 by Helena Rasche

Added/updated 4 files


Frozen 1.0 ebfcaa7

3.0 (earliest) Created 25th Jun 2024 at 11:12 by Helena Rasche

Added/updated 4 files


Frozen 3.0 9700704
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Views: 313   Downloads: 106

Created: 25th Jun 2024 at 11:12

Last updated: 7th Oct 2024 at 14:09

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