Workflows
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Type: Nextflow
Creators: Peter J Bailey, Bailey PJ, Alexander Peltzer, Botvinnik O, Olga Botvinnik, Marques de Almeida F, Peltzer A, Sturm G
Submitter: WorkflowHub Bot
Type: Nextflow
Creators: Jasmin Frangenberg, Anan Ibrahim, James A. Fellows Yates
Submitter: WorkflowHub Bot
This workflow runs the FEELnc tool to annotate long non-coding RNAs. Before annotating these long non-coding RNAs, StringTie will be used to assemble the RNA-seq alignments into potential trancriptions. The gffread tool provides a genome annotation file in GTF format.
This workflow allows for genome annotation using Maker and evaluates the quality of the annotation.
This workflow creates taxonomic summary tables for a specified taxonomic rank out of MAPseq's OTU tables output collection.