Workflows

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178 Workflows visible to you, out of a total of 178
lcms-preprocessing/main

This workflow is composed with the XCMS tool R package (Smith, C.A. 2006) able to extract, filter, align and fill gapand the possibility to annotate isotopes, adducts and fragments using the CAMERA R package (Kuhl, C 2012).

https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/lcms-preprocessing/tutorial.html

Type: Galaxy

Creator: workflow4metabolomics

Submitter: WorkflowHub Bot

Mitogenome-assembly-VGP0/main

Generate mitochondrial assembly based on PacBio HiFi reads. Part of the VGP suite, it can be run at any time independently of the other workflows. This workflow uses MitoHiFi and a mitochondrial reference to assemble the mitochondrial genome from PacBio reads. You do not need to provide the reference yourself, only the Latin name of the species.

Type: Galaxy

Creator: VGP, Galaxy

Submitter: WorkflowHub Bot

nf-core/mhcquant

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Type: Nextflow

Creator: Leon Bichmann

Submitter: WorkflowHub Bot

nf-core/bamtofastq

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Type: Nextflow

Creator: Friederike Hanssen

Submitter: WorkflowHub Bot

nf-core/mag

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Type: Nextflow

Creators: No author provided, Hadrien Gourlé, Daniel Straub, Sabrina Krakau

Submitter: WorkflowHub Bot

nf-core/coproid

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Type: Nextflow

Creator: Maxime Borry

Submitter: WorkflowHub Bot

gcms-metams/main

This workflow is composed with the XCMS tool R package (Smith, C.A. 2006) able to extract and the metaMS R package (Wehrens, R 2014) for the field of untargeted metabolomics.

https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/gcms/tutorial.html

Type: Galaxy

Creator: workflow4metabolomics

Submitter: WorkflowHub Bot

nf-core/methylong

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Type: Nextflow

Creators: None

Submitter: WorkflowHub Bot

nf-core/epitopeprediction

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Type: Nextflow

Creators: Christopher Mohr, Alexander Peltzer

Submitter: WorkflowHub Bot

kmer-profiling-hifi-trio-VGP2/main

Create Meryl Database used for the estimation of assembly parameters and quality control with Merqury. Part of the VGP pipeline.

Type: Galaxy

Creator: VGP, Galaxy

Submitter: WorkflowHub Bot

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