Mitogenome-assembly-VGP0/main
v0.2 (latest)

v0.2 (latest)

v0.1 (earliest)

Workflow Type: Galaxy

Generate mitochondrial assembly based on PacBio HiFi reads. Part of the VGP suite, it can be run at any time independently of the other workflows. This workflow uses MitoHiFi and a mitochondrial reference to assemble the mitochondrial genome from PacBio reads. You do not need to provide the reference yourself, only the Latin name of a closely related species.

SEEK ID: https://workflowhub.eu/workflows/738?version=2

Inputs

ID	Name	Description	Type
Collection of Pacbio Data	Collection of Pacbio Data	n/a	File[]
Email adress	Email adress	Required for NCBI database query	string
Species name (latin name)	Species name (latin name)	Latin name of species	string

Steps

ID	Name	Description
3	MitoHiFi	toolshed.g2.bx.psu.edu/repos/bgruening/mitohifi/mitohifi/3.2.3+galaxy0
4	MitoHiFi	toolshed.g2.bx.psu.edu/repos/bgruening/mitohifi/mitohifi/3.2.3+galaxy0
5	Compress file(s)	toolshed.g2.bx.psu.edu/repos/iuc/compress_file/compress_file/0.1.0

Outputs

ID	Name	Description	Type
mitogenome_annotation	mitogenome_annotation	n/a	File
mitogenome_genbank	mitogenome_genbank	n/a	File
contigs_stats	contigs_stats	n/a	File
mitogenome_coverage	mitogenome_coverage	n/a	File
output_file	output_file	n/a	File

Version History

v0.2 (latest) Created 15th May 2025 at 03:01 by WorkflowHub Bot

Updated to v0.2

Frozen v0.2 ab4120d

v0.1 (earliest) Created 8th Feb 2024 at 03:01 by WorkflowHub Bot

Updated to v0.1

Frozen v0.1 97cce79

Creators and Submitter

Creators

Not specified

Additional credit

VGP, Galaxy

Submitter

WorkflowHub Bot

License

Creative Commons Attribution 4.0 International

Activity

Views: 3112 Downloads: 388 Runs: 1

Created: 8th Feb 2024 at 03:01

Last updated: 15th May 2025 at 03:01

Mitogenome-assembly-VGP0/main v0.2 (latest) v0.2 (latest) v0.1 (earliest)