Galaxy
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run on anything, from a laptop, to large clusters, to the cloud
Web page: https://galaxyproject.org/
Funding codes:- HG006620
- 1661497
- 1929694
- 031L0101C
usegalaxy.org is supported by NIH and NSF Grants HG006620, 1661497, and 1929694. usegalaxy.eu is supported by the German Federal Ministry of Education and Research grant 031L0101C and de.NBI-epi. usegalaxy.org.au is supported by Bioplatforms Australia and the Australian Research Data Commons.
Related items
Teams: Galaxy Training Network
Organizations: Galaxy
Teams: Galaxy Training Network
Organizations: Galaxy
I'm a bot managed by @hexylena to upload workflows from the Galaxy Training Network to the WorkflowHub. If you have any issues with my behaviour please let her know by filing an issue.
Teams: usegalaxy-eu, Galaxy Training Network
Organizations: European Galaxy Team
https://orcid.org/0000-0002-5857-1477
Teams: GalaxyProject SARS-CoV-2, Galaxy Training Network
Organizations: ELIXIR Belgium
https://orcid.org/0000-0003-0522-5674
Teams: Galaxy Training Network
Organizations: Erasmus University Medical Centre
https://orcid.org/0000-0003-3803-468X
Post-doc at ErasmusMC, Galaxy Training Network (GTN) Lead
Teams: Galaxy Training Network
Organizations: European Galaxy Team
Teams: Galaxy Training Network
Organizations: University of Bradford
Teams: Galaxy Training Network
Organizations: University of Bradford
https://orcid.org/0009-0004-2454-5950
Teams: EOSC4Cancer
Organizations: Albert-Ludwigs-Universität Freiburg
https://orcid.org/0000-0002-9464-6640
Teams: usegalaxy-eu, Galaxy Training Network, GalaxyProject SARS-CoV-2
Organizations: Galaxy
https://orcid.org/0000-0002-5987-8032
Failure is not an option.
借屍還魂
The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
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The idea of this workflow is to compare annotation with two annotation tools that differ in their approach and operation.
Associated Tutorial
This workflows is part of the tutorial Comparison of two annotation tools - Helixer and Braker3, available in the GTN
Features
- Includes [Galaxy Workflow ...
Metatranscriptomics analysis using microbiome RNA-seq data
Associated Tutorial
This workflows is part of the tutorial Metatranscriptomics analysis using microbiome RNA-seq data, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes ...
Metatranscriptomics analysis using microbiome RNA-seq data (short)
Associated Tutorial
This workflows is part of the tutorial Metatranscriptomics analysis using microbiome RNA-seq data (short), available in the GTN
Features
- Includes Galaxy Workflow Tests ...
Metatranscriptomics analysis using microbiome RNA-seq data (short)
Associated Tutorial
This workflows is part of the tutorial Metatranscriptomics analysis using microbiome RNA-seq data (short), available in the GTN
Features
- Includes Galaxy Workflow Tests ...
Metatranscriptomics analysis using microbiome RNA-seq data (short)
Associated Tutorial
This workflows is part of the tutorial Metatranscriptomics analysis using microbiome RNA-seq data (short), available in the GTN
Features
- Includes Galaxy Workflow Tests ...
Assembly of metagenomic sequencing data
Associated Tutorial
This workflows is part of the tutorial Assembly of metagenomic sequencing data, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Associated Tutorial
This workflows is part of the tutorial Deep Learning (Part 2) - Recurrent neural networks (RNN), available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Kaivan Kamali
Tutorial Author(s): [Kaivan ...
Final output is a table of Taxa and how many sequences aligned with them. This table can be used to then visualize via a pie chart.
Associated Tutorial
This workflows is part of the tutorial Taxonomic Analysis of eDNA, available in the GTN
Features
- Includes a Galaxy Workflow Report ...
Age prediction using machine learning
Associated Tutorial
This workflows is part of the tutorial Age prediction using machine learning, available in the GTN
Thanks to...
Tutorial Author(s): Ekaterina Polkh, [Anup ...
Age prediction using machine learning
Associated Tutorial
This workflows is part of the tutorial Age prediction using machine learning, available in the GTN
Thanks to...
Tutorial Author(s): Ekaterina Polkh, [Anup ...
Basics of machine learning
Associated Tutorial
This workflows is part of the tutorial Basics of machine learning, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): [Anup ...
Interval-Wise Testing for omics data
Associated Tutorial
This workflows is part of the tutorial Interval-Wise Testing for omics data, available in the GTN
Thanks to...
Tutorial Author(s): Marzia A Cremona, Fabio Cumbo ...
Visualization of RNA-Seq results with heatmap2
Associated Tutorial
This workflows is part of the tutorial Visualization of RNA-Seq results with heatmap2, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
**Tutorial ...
Identify upregulated miRNAS and analyze potential targets in downregulated genes.
Associated Tutorial
This workflows is part of the tutorial Whole transcriptome analysis of Arabidopsis thaliana, available in the GTN
Thanks to...
Tutorial Author(s): Cristóbal Gallardo, ...
roscoff hackathon
Associated Tutorial
This workflows is part of the tutorial De novo transcriptome assembly, annotation, and differential expression analysis, available in the GTN
Thanks to...
Tutorial Author(s): Anthony Bretaudeau, [Gildas Le ...
Reference-based RNA-Seq data analysis
Associated Tutorial
This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Bérénice Batut, ...
Associated Tutorial
This workflows is part of the tutorial From NDVI data with OpenEO to time series visualisation with Holoviews, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Marie Jossé
**Tutorial ...
Reference-based RNA-Seq data analysis
Associated Tutorial
This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Bérénice Batut, ...
Associated Tutorial
This workflows is part of the tutorial From NDVI data with OpenEO to time series visualisation with Holoviews, available in the GTN
Thanks to...
Workflow Author(s): Marie Jossé
Tutorial Author(s): Marie Josse
Tutorial Contributor(s): [Helena ...
Reference-based RNA-Seq data analysis
Associated Tutorial
This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Uses ...
