GTN Bot

The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.

These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!

Associated Tutorial

This workflows is part of the tutorial Deep Learning (Part 2) - Recurrent neural networks (RNN), available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Kaivan Kamali

Tutorial Author(s): [Kaivan ...

Final output is a table of Taxa and how many sequences aligned with them. This table can be used to then visualize via a pie chart.

Associated Tutorial

This workflows is part of the tutorial Taxonomic Analysis of eDNA, available in the GTN

Features

• Includes a Galaxy Workflow Report ...

Age prediction using machine learning

Associated Tutorial

This workflows is part of the tutorial Age prediction using machine learning, available in the GTN

Thanks to...

Tutorial Author(s): Ekaterina Polkh, [Anup ...

Age prediction using machine learning

Associated Tutorial

This workflows is part of the tutorial Age prediction using machine learning, available in the GTN

Thanks to...

Tutorial Author(s): Ekaterina Polkh, [Anup ...

Basics of machine learning

Associated Tutorial

This workflows is part of the tutorial Basics of machine learning, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Anup ...

Interval-Wise Testing for omics data

Associated Tutorial

This workflows is part of the tutorial Interval-Wise Testing for omics data, available in the GTN

Thanks to...

Tutorial Author(s): Marzia A Cremona, Fabio Cumbo ...

Visualization of RNA-Seq results with heatmap2

Associated Tutorial

This workflows is part of the tutorial Visualization of RNA-Seq results with heatmap2, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

**Tutorial ...

Identify upregulated miRNAS and analyze potential targets in downregulated genes.

Associated Tutorial

This workflows is part of the tutorial Whole transcriptome analysis of Arabidopsis thaliana, available in the GTN

Thanks to...

Tutorial Author(s): Cristóbal Gallardo, ...

roscoff hackathon

Associated Tutorial

This workflows is part of the tutorial De novo transcriptome assembly, annotation, and differential expression analysis, available in the GTN

Thanks to...

Tutorial Author(s): Anthony Bretaudeau, [Gildas Le ...

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Bérénice Batut, ...

Associated Tutorial

This workflows is part of the tutorial From NDVI data with OpenEO to time series visualisation with Holoviews, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Marie Jossé

**Tutorial ...

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Bérénice Batut, ...

Associated Tutorial

This workflows is part of the tutorial From NDVI data with OpenEO to time series visualisation with Holoviews, available in the GTN

Thanks to...

Workflow Author(s): Marie Jossé

Tutorial Author(s): Marie Josse

Tutorial Contributor(s): [Helena ...

Reference-based RNA-Seq data analysis

Associated Tutorial

This workflows is part of the tutorial Reference-based RNA-Seq data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Uses ...

Regional GAM

Associated Tutorial

This workflows is part of the tutorial Regional GAM, available in the GTN

Thanks to...

Tutorial Author(s): Clara Urfer, Elisa Michon, [Yvan Le ...

Visualization of RNA-Seq results with Volcano Plot

Associated Tutorial

This workflows is part of the tutorial Visualization of RNA-Seq results with Volcano Plot, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes ...

Associated Tutorial

This workflows is part of the tutorial RNA-Seq data analysis, clustering and visualisation tutorial, available in the GTN

Thanks to...

Tutorial Author(s): Peter-Bram 't Hoen, [Casper de ...

Regional GAM

Associated Tutorial

This workflows is part of the tutorial Regional GAM, available in the GTN

Thanks to...

Tutorial Author(s): Clara Urfer, Elisa Michon, [Yvan Le ...

Regional GAM

Associated Tutorial

This workflows is part of the tutorial Regional GAM, available in the GTN

Thanks to...

Tutorial Author(s): Clara Urfer, Elisa Michon, [Yvan Le ...

CLIP-Seq data analysis from pre-processing to motif detection

Associated Tutorial

This workflows is part of the tutorial CLIP-Seq data analysis from pre-processing to motif detection, available in the GTN

Thanks to...

Tutorial Author(s): Florian Heyl, [Daniel ...