This is the workflow for the Clustering 3K PBMCs with Seurat tutorial if you are using the separate preprocessing tools (NormalizeData, FindVariableFeatures, ScaleData).

Associated Tutorial

This workflows is part of the tutorial Clustering 3K PBMCs with Seurat, available in the GTN

Features

• Includes [Galaxy Workflow ...

This is the workflow for the Clustering 3K PBMCs with Seurat tutorial if you use SCTransform for preprocessing.

Associated Tutorial

This workflows is part of the tutorial Clustering 3K PBMCs with Seurat, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

This workflow generates from only an EBI SCXA reference the metadata for creating an ESet object

Associated Tutorial

This workflows is part of the tutorial Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution, available in the GTN

Thanks to...

Workflow Author(s): Wendi Bacon, ...

This workflow creates an ESet object from scRNA metadata file and EBI SCXA retrieveal

Associated Tutorial

This workflows is part of the tutorial Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution, available in the GTN

Features

• Uses ...

This workflow creates bulk ESet objects from uploaded raw matrix & metadata files

Associated Tutorial

This workflows is part of the tutorial Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution, available in the GTN

Features

• Uses subworkflows ...

Associated Tutorial

This workflows is part of the tutorial Inferring single cell trajectories with Scanpy, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Marisa Loach

Tutorial Author(s): ...

This workflow runs 3 comparisons using MuSiC Deconvolution compare: where datasets cell compositions are inferred from a reference containing healthy and diseased cells; where diseased are inferred from disease and healthy from healthy; and where both diseased and healthy are inferred from a healthy reference.

Associated Tutorial

This workflows is part of the tutorial Comparing inferred cell compositions using MuSiC deconvolution, ...

Updated tool versions Aug 24 2022

Associated Tutorial

This workflows is part of the tutorial Filter, plot and explore single-cell RNA-seq data with Scanpy, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy ...