MuSiC-Deconvolution: Compare
1.0

Workflow Type: Galaxy

This workflow runs 3 comparisons using MuSiC Deconvolution compare: where datasets cell compositions are inferred from a reference containing healthy and diseased cells; where diseased are inferred from disease and healthy from healthy; and where both diseased and healthy are inferred from a healthy reference.

Associated Tutorial

This workflows is part of the tutorial Comparing inferred cell compositions using MuSiC deconvolution, available in the GTN

Thanks to...

Workflow Author(s): Wendi Bacon, Mehmet Tekman

Tutorial Author(s): Wendi Bacon, Mehmet Tekman

Tutorial Contributor(s): Marisa Loach, Mehmet Tekman, Saskia Hiltemann, Wendi Bacon, Helena Rasche, Carlos Chee Mendonça, Morgan Howells, Björn Grüning

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
ESet Object - Bulk:T2D #main/ESet Object - Bulk:T2D n/a
  • File
ESet Object - Bulk:normal #main/ESet Object - Bulk:normal n/a
  • File
ESet Object - Single cell Total #main/ESet Object - Single cell Total n/a
  • File
ESet Object - Single cell:T2D #main/ESet Object - Single cell:T2D n/a
  • File
ESet Object - Single cell:normal #main/ESet Object - Single cell:normal n/a
  • File

Steps

ID Name Description
5 MuSiC Compare: Like with like Here the T2D bulk sample is inferred from the sc T2D sample, while the normal bulk sample is inferred from the sc normal sample toolshed.g2.bx.psu.edu/repos/bgruening/music_compare/music_compare/0.1.1+galaxy4
6 MuSiC Compare: healthyscref Here the T2D bulk sample and the normal sample are separately compared separately against the healthy sc reference only (excluding unhealthy sc reference) toolshed.g2.bx.psu.edu/repos/bgruening/music_compare/music_compare/0.1.1+galaxy4
7 MuSiC Compare - Altogether toolshed.g2.bx.psu.edu/repos/bgruening/music_compare/music_compare/0.1.1+galaxy4

Outputs

ID Name Description Type
_anonymous_output_1 #main/_anonymous_output_1 n/a
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_anonymous_output_10 #main/_anonymous_output_10 n/a
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_anonymous_output_11 #main/_anonymous_output_11 n/a
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_anonymous_output_12 #main/_anonymous_output_12 n/a
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_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File
_anonymous_output_3 #main/_anonymous_output_3 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
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_anonymous_output_5 #main/_anonymous_output_5 n/a
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_anonymous_output_6 #main/_anonymous_output_6 n/a
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_anonymous_output_7 #main/_anonymous_output_7 n/a
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_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

1.0 (earliest) Created 2nd Jun 2025 at 10:56 by GTN Bot

Added/updated 4 files


Open master 1495b8d
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Views: 49   Downloads: 6   Runs: 0

Created: 2nd Jun 2025 at 10:55

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