This workflow generates from only an EBI SCXA reference the metadata for creating an ESet object

Associated Tutorial

This workflows is part of the tutorial Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution, available in the GTN

Thanks to...

Workflow Author(s): Wendi Bacon, ...

This workflow creates an ESet object from scRNA metadata file and EBI SCXA retrieveal

Associated Tutorial

This workflows is part of the tutorial Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution, available in the GTN

Features

• Uses ...

This workflow creates bulk ESet objects from uploaded raw matrix & metadata files

Associated Tutorial

This workflows is part of the tutorial Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution, available in the GTN

Features

• Uses subworkflows ...

Trajectory analysis using Monocle3, starting from AnnData

Associated Tutorial

This workflows is part of the tutorial Inferring single cell trajectories with Monocle3, available in the GTN

Features

• Includes Galaxy Workflow Tests

...

Preparing and filtering gene and cell annotations files and expression matrix to be passed as input for Monocle

Associated Tutorial

This workflows is part of the tutorial Inferring single cell trajectories with Monocle3, available in the GTN

Thanks to...

Tutorial Author(s): [Julia ...

Trajectory analysis using Monocle3, starting from 3 input files: expression matrix, gene and cell annotations

Associated Tutorial

This workflows is part of the tutorial Inferring single cell trajectories with Monocle3, available in the GTN

Thanks to...

Tutorial Author(s): [Julia ...

This workflow runs 3 comparisons using MuSiC Deconvolution compare: where datasets cell compositions are inferred from a reference containing healthy and diseased cells; where diseased are inferred from disease and healthy from healthy; and where both diseased and healthy are inferred from a healthy reference.

Associated Tutorial

This workflows is part of the tutorial Comparing inferred cell compositions using MuSiC deconvolution, ...

Updated tool versions Aug 24 2022

Associated Tutorial

This workflows is part of the tutorial Filter, plot and explore single-cell RNA-seq data with Scanpy, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy ...