Nucleoli segmentation and feature extraction using CellProfiler

Associated Tutorial

This workflows is part of the tutorial Nucleoli segmentation and feature extraction using CellProfiler, available in the GTN

Thanks to...

Tutorial Author(s): Beatriz Serrano-Solano, ...

example cellprofiler pipeline

Associated Tutorial

This workflows is part of the tutorial Object tracking using CellProfiler, available in the GTN

Thanks to...

Tutorial Author(s): Yi Sun, [Beatriz ...

Workflow for tracking objects in Cell Profiler: https://training.galaxyproject.org/training-material/topics/imaging/tutorials/object-tracking-using-cell-profiler/tutorial.html

This workflow has been created as part of Demonstrator 6 of the project EOSC-Life (within WP3) and is focused on reusing publicly available RNAi screens to gain insights into the nucleolus biology. The workflow downloads images from the Image Data Resource (IDR), performs object segmentation (of nuclei and nucleoli) and feature extraction of the images and objects identified.

Tutorial: https://training.galaxyproject.org/training-material/topics/imaging/tutorials/tutorial-CP/tutorial.html