Gene-based Pathogen Identification

Nanopore datasets analysis - Phylogenetic Identification - antibiotic resistance genes detection and contigs building

Associated Tutorial

This workflows is part of the tutorial Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition, available in the GTN

Features

  • Includes ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Nanopore Preprocessing

Microbiome - QC and Contamination Filtering

Associated Tutorial

This workflows is part of the tutorial Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Pathogen Detection PathoGFAIR Samples Aggregation and Visualisation

Pathogens of all samples report generation and visualization

Associated Tutorial

This workflows is part of the tutorial Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition, available in the GTN

Features

  • Includes a [Galaxy Workflow ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Taxonomy Profiling and Visualization with Krona

Microbiome - Taxonomy Profiling

Associated Tutorial

This workflows is part of the tutorial Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Allele-based Pathogen Identification

Microbiome - Variant calling and Consensus Building

Associated Tutorial

This workflows is part of the tutorial Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

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