Refining Genome Annotations with Apollo
Associated Tutorial
This workflows is part of the tutorial Refining Genome Annotations with Apollo (prokaryotes), available in the GTN
Thanks to...
Tutorial Author(s): Anthony Bretaudeau, [Helena ...
Genome annotation with Maker (short)
Associated Tutorial
This workflows is part of the tutorial Genome annotation with Maker (short), available in the GTN
Thanks to...
Tutorial Author(s): Anthony Bretaudeau
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A workflow designed to compare chromosomes and study large-scale rearrangements using CHROMEISTER
Associated Tutorial
This workflows is part of the tutorial From small to large-scale genome comparison, available in the GTN
Thanks to...
Tutorial Author(s): Esteban Perez-Wohlfeil ...
A workflow designed to compare two sequences using GECKO, extract repeats and perform multiple sequence alignment
Associated Tutorial
This workflows is part of the tutorial From small to large-scale genome comparison, available in the GTN
Thanks to...
Tutorial Author(s): Esteban Perez-Wohlfeil ...
Masking repeats in a genome using RepeatMasker
Associated Tutorial
This workflows is part of the tutorial Masking repeats with RepeatMasker, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Anthony ...
CRISPR screen analysis
Associated Tutorial
This workflows is part of the tutorial CRISPR screen analysis, available in the GTN
Thanks to...
Tutorial Author(s): Maria Doyle, Kenji Fujihara, ...
Essential genes detection with Transposon insertion sequencing
Associated Tutorial
This workflows is part of the tutorial Essential genes detection with Transposon insertion sequencing, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks
...
Structural and functional genome annotation with Funannotate
Associated Tutorial
This workflows is part of the tutorial Genome annotation with Funannotate, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
**Workflow ...
Functional annotation of protein sequences
Associated Tutorial
This workflows is part of the tutorial Functional annotation of protein sequences, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): ...
Workflows for comparison of genes in annotated genomes
Associated Tutorial
This workflows is part of the tutorial Comparative gene analysis in unannotated genomes, available in the GTN
Thanks to...
Workflow Author(s): Anton Nekrutenko
Tutorial Author(s): Anton Nekrutenko ...
Bacterial Genome Annotation
Associated Tutorial
This workflows is part of the tutorial Bacterial Genome Annotation, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Bérénice Batut, ...
Genome annotation with Maker
Associated Tutorial
This workflows is part of the tutorial Genome annotation with Maker, available in the GTN
Thanks to...
Workflow Author(s): Anthony Bretaudeau, French National Institute for Agriculture, Food, and Environment (INRAE)
Tutorial Author(s): [Anthony ...
This workflow allows you to annotate a genome with Helixer and evaluate the quality of the annotation using BUSCO and Genome Annotation statistics. GFFRead is also used to predict protein sequences derived from this annotation, and BUSCO and OMArk are used to assess proteome quality.
Associated Tutorial
This workflows is part of the tutorial Genome annotation with Helixer, available ...
Genome annotation with Prokka
Associated Tutorial
This workflows is part of the tutorial Genome annotation with Prokka, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Anna Syme, Torsten ...
Identification of AMR genes in an assembled bacterial genome
Associated Tutorial
This workflows is part of the tutorial Identification of AMR genes in an assembled bacterial genome, available in the GTN
Features
- Includes Galaxy Workflow Tests ...
Long non-coding RNAs (lncRNAs) annotation with FEELnc
Associated Tutorial
This workflows is part of the tutorial Long non-coding RNAs (lncRNAs) annotation with FEELnc, available in the GTN
Thanks to...
Workflow Author(s): Stéphanie Robin
Tutorial Author(s): Stéphanie Robin ...
Annotation of an assembled bacterial genomes to detect genes, potential plasmids, integrons and Insertion sequence (IS) elements.
Type: Galaxy
Creators: ABRomics , Pierre Marin, Clea Siguret, abromics-consortium
Submitter: WorkflowHub Bot
score-assemblies
A Snakemake-wrapper for evaluating de novo bacterial genome assemblies, e.g. from Oxford Nanopore (ONT) or Illumina sequencing.
The workflow includes the following programs:
...
Functional annotation of protein sequences
Structural and functional genome annotation with Funannotate
Masking repeats in a genome using RepeatMasker
Refining Genome Annotations with Apollo