GECKO pairwise comparison
1.0

Workflow Type: Galaxy

A workflow designed to compare two sequences using GECKO, extract repeats and perform multiple sequence alignment

Associated Tutorial

This workflows is part of the tutorial From small to large-scale genome comparison, available in the GTN

Thanks to...

Tutorial Author(s): Esteban Perez-Wohlfeil

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
Query sequence #main/Query sequence n/a
  • File
Reference sequence #main/Reference sequence n/a
  • File

Steps

ID Name Description
2 Gecko toolshed.g2.bx.psu.edu/repos/iuc/gecko/gecko/1.2
3 Text reformatting toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2
4 ClustalW toolshed.g2.bx.psu.edu/repos/devteam/clustalw/clustalw/2.1

Outputs

ID Name Description Type
ClustalW on input dataset(s): clustal #main/ClustalW on input dataset(s): clustal n/a
  • File
ClustalW on input dataset(s): dnd #main/ClustalW on input dataset(s): dnd n/a
  • File
Gecko on input dataset(s): CSV #main/Gecko on input dataset(s): CSV n/a
  • File
_anonymous_output_3 #main/_anonymous_output_3 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File

Version History

1.0 (earliest) Created 2nd Jun 2025 at 10:57 by GTN Bot

Added/updated 4 files


Open master 3e62131
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Created: 2nd Jun 2025 at 10:57

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