ONTeater is a eukaryotic genome assembly pipeline intended to produce highly-contiguous genomes with a single input of Oxford NanoPore Tech (ONT) longread data, although PacBio is accepted as well. Information can be found here. Originally developed to support genome assembly efforts by OIKOS genomics, predominantly of nonmodel vertebrate species.

Microbiome - QC and Contamination Filtering

Associated Tutorial

This workflows is part of the tutorial Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition, available in the GTN

Features

• Includes Galaxy Workflow Tests ...