Metatranscriptomics analysis using microbiome RNA-seq data

Associated Tutorial

This workflows is part of the tutorial Metatranscriptomics analysis using microbiome RNA-seq data, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes ...

Metatranscriptomics analysis using microbiome RNA-seq data (short)

Associated Tutorial

This workflows is part of the tutorial Metatranscriptomics analysis using microbiome RNA-seq data (short), available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Metatranscriptomics analysis using microbiome RNA-seq data (short)

Associated Tutorial

This workflows is part of the tutorial Metatranscriptomics analysis using microbiome RNA-seq data (short), available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Metatranscriptomics analysis using microbiome RNA-seq data (short)

Associated Tutorial

This workflows is part of the tutorial Metatranscriptomics analysis using microbiome RNA-seq data (short), available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Assembly of metagenomic sequencing data

Associated Tutorial

This workflows is part of the tutorial Assembly of metagenomic sequencing data, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Antibiotic resistance detection

Associated Tutorial

This workflows is part of the tutorial Antibiotic resistance detection, available in the GTN

Thanks to...

Tutorial Author(s): Willem de Koning, [Saskia ...

Analyses of metagenomics data - The global picture

Associated Tutorial

This workflows is part of the tutorial Analyses of metagenomics data - The global picture, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

**Tutorial ...

16S rRNA analysis with Nanopore reads

Associated Tutorial

This workflows is part of the tutorial 16S Microbial analysis with Nanopore data, available in the GTN

Thanks to...

Tutorial Author(s): Cristóbal Gallardo

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Analyses of metagenomics data - The global picture

Associated Tutorial

This workflows is part of the tutorial Analyses of metagenomics data - The global picture, available in the GTN

Thanks to...

Tutorial Author(s): Saskia Hiltemann, [Bérénice ...

This workflow performs taxonomic profiling of metagenomic data and visualizes microbial community composition using Kraken2 and Bracken as well as MetaPhlAn.

Associated Tutorial

This workflows is part of the tutorial Taxonomic Profiling and Visualization of Metagenomic Data, available in the GTN

Features

• Includes [Galaxy Workflow ...

16S Microbial Analysis with mothur (extended)

Associated Tutorial

This workflows is part of the tutorial 16S Microbial Analysis with mothur (extended), available in the GTN

Thanks to...

Tutorial Author(s): Saskia Hiltemann, [Bérénice ...

Identification of the micro-organisms in a beer using Nanopore sequencing

Associated Tutorial

This workflows is part of the tutorial Identification of the micro-organisms in a beer using Nanopore sequencing, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

16S Microbial Analysis with mothur (short)

Associated Tutorial

This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN

Thanks to...

Workflow Author(s): Saskia Hiltemann

Tutorial Author(s): Saskia Hiltemann, ...

16S Microbial Analysis with mothur (short)

Associated Tutorial

This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN

Thanks to...

Workflow Author(s): Saskia Hiltemann

Tutorial Author(s): Saskia Hiltemann, ...

16S Microbial Analysis with mothur (short)

Associated Tutorial

This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN

Thanks to...

Workflow Author(s): Saskia Hiltemann

Tutorial Author(s): Saskia Hiltemann, ...

16S Microbial Analysis with mothur (short)

Associated Tutorial

This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN

Thanks to...

Workflow Author(s): Saskia Hiltemann

Tutorial Author(s): Saskia Hiltemann, ...

16S Microbial Analysis with mothur (short)

Associated Tutorial

This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN

Thanks to...

Workflow Author(s): Saskia Hiltemann

Tutorial Author(s): Saskia Hiltemann, ...

16S Microbial Analysis with mothur (short)

Associated Tutorial

This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN

Thanks to...

Workflow Author(s): Saskia Hiltemann

Tutorial Author(s): Saskia Hiltemann, ...

16S Microbial Analysis with mothur (short)

Associated Tutorial

This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN

Thanks to...

Workflow Author(s): Saskia Hiltemann

Tutorial Author(s): Saskia Hiltemann, ...

Building an amplicon sequence variant (ASV) table from 16S data using DADA2

Associated Tutorial

This workflows is part of the tutorial Building an amplicon sequence variant (ASV) table from 16S data using DADA2, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

gSpreadComp: Streamlining Microbial Community Analysis for Resistance, Virulence, and Plasmid-Mediated Spread

Overview

gSpreadComp is a UNIX-based, modular bioinformatics toolkit designed to streamline comparative genomics for analyzing microbial communities. It integrates genome annotation, gene spread calculation, plasmid-mediated horizontal gene transfer (HGT) detection and resistance-virulence ranking within the analysed microbial community to help researchers identify potential ...

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A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.

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