Antibiotic resistance detection
Associated Tutorial
This workflows is part of the tutorial Antibiotic resistance detection, available in the GTN
Thanks to...
Tutorial Author(s): Willem de Koning, [Saskia ...
Analyses of metagenomics data - The global picture
Associated Tutorial
This workflows is part of the tutorial Analyses of metagenomics data - The global picture, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
**Tutorial ...
16S rRNA analysis with Nanopore reads
Associated Tutorial
This workflows is part of the tutorial 16S Microbial analysis with Nanopore data, available in the GTN
Thanks to...
Tutorial Author(s): Cristóbal Gallardo
[![gtn star logo followed by the ...
Analyses of metagenomics data - The global picture
Associated Tutorial
This workflows is part of the tutorial Analyses of metagenomics data - The global picture, available in the GTN
Thanks to...
Tutorial Author(s): Saskia Hiltemann, [Bérénice ...
This workflow performs taxonomic profiling of metagenomic data and visualizes microbial community composition using Kraken2 and Bracken as well as MetaPhlAn.
Associated Tutorial
This workflows is part of the tutorial Taxonomic Profiling and Visualization of Metagenomic Data, available in the GTN
Features
- Includes [Galaxy Workflow ...
16S Microbial Analysis with mothur (extended)
Associated Tutorial
This workflows is part of the tutorial 16S Microbial Analysis with mothur (extended), available in the GTN
Thanks to...
Tutorial Author(s): Saskia Hiltemann, [Bérénice ...
Identification of the micro-organisms in a beer using Nanopore sequencing
Associated Tutorial
This workflows is part of the tutorial Identification of the micro-organisms in a beer using Nanopore sequencing, available in the GTN
Features
- Includes Galaxy Workflow Tests ...
16S Microbial Analysis with mothur (short)
Associated Tutorial
This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN
Thanks to...
Workflow Author(s): Saskia Hiltemann
Tutorial Author(s): Saskia Hiltemann, ...
16S Microbial Analysis with mothur (short)
Associated Tutorial
This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN
Thanks to...
Workflow Author(s): Saskia Hiltemann
Tutorial Author(s): Saskia Hiltemann, ...
16S Microbial Analysis with mothur (short)
Associated Tutorial
This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN
Thanks to...
Workflow Author(s): Saskia Hiltemann
Tutorial Author(s): Saskia Hiltemann, ...
16S Microbial Analysis with mothur (short)
Associated Tutorial
This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN
Thanks to...
Workflow Author(s): Saskia Hiltemann
Tutorial Author(s): Saskia Hiltemann, ...
16S Microbial Analysis with mothur (short)
Associated Tutorial
This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN
Thanks to...
Workflow Author(s): Saskia Hiltemann
Tutorial Author(s): Saskia Hiltemann, ...
16S Microbial Analysis with mothur (short)
Associated Tutorial
This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN
Thanks to...
Workflow Author(s): Saskia Hiltemann
Tutorial Author(s): Saskia Hiltemann, ...
16S Microbial Analysis with mothur (short)
Associated Tutorial
This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN
Thanks to...
Workflow Author(s): Saskia Hiltemann
Tutorial Author(s): Saskia Hiltemann, ...
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
Associated Tutorial
This workflows is part of the tutorial Building an amplicon sequence variant (ASV) table from 16S data using DADA2, available in the GTN
Features
- Includes Galaxy Workflow Tests ...
gSpreadComp: Streamlining Microbial Community Analysis for Resistance, Virulence, and Plasmid-Mediated Spread
Overview
gSpreadComp is a UNIX-based, modular bioinformatics toolkit designed to streamline comparative genomics for analyzing microbial communities. It integrates genome annotation, gene spread calculation, plasmid-mediated horizontal gene transfer (HGT) detection and resistance-virulence ranking within the analysed microbial community to help researchers identify potential ...
Type: Nextflow
Creators: James A. Fellows Yates, Sofia Stamouli, Moritz E. Beber, Lauri Mesilaakso, Thomas A. Christensen II, Jianhong Ou, Mahwash Jamy, Maxime Borry, Rafal Stepien, Tanja Normark
Submitter: WorkflowHub Bot
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.