Training: 16S rRNA Analysis with Nanopore Sequencing Reads 1.0
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Run on Galaxy16S rRNA analysis with Nanopore reads
Associated Tutorial
This workflows is part of the tutorial 16S Microbial analysis with Nanopore data, available in the GTN
Thanks to...
Tutorial Author(s): Cristóbal Gallardo
Steps
| ID | Name | Description |
|---|---|---|
| 1 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 2 | Porechop | toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.3 |
| 3 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy1 |
| 4 | fastp | toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0 |
| 5 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 6 | Kraken2 | toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.0.8_beta+galaxy0 |
| 7 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy1 |
| 8 | Reverse | toolshed.g2.bx.psu.edu/repos/iuc/datamash_reverse/datamash_reverse/1.1.0 |
| 9 | Replace Text | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2 |
| 10 | Remove beginning | Remove beginning1 |
| 11 | Krona pie chart | toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1 |
Version History
master
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Views: 47 Downloads: 6 Runs: 0
Created: 2nd Jun 2025 at 10:54
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