Workflow 3: Classification [Galaxy Training: 16S Microbial Analysis With Mothur] 1.0
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Run on Galaxy16S Microbial Analysis with mothur (short)
Associated Tutorial
This workflows is part of the tutorial 16S Microbial Analysis with mothur (short), available in the GTN
Thanks to...
Workflow Author(s): Saskia Hiltemann
Tutorial Author(s): Saskia Hiltemann, Bérénice Batut, Dave Clements
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Cleaned Sequences | #main/Cleaned Sequences | n/a |
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| Count Table | #main/Count Table | n/a |
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| Training set FASTA | #main/Training set FASTA | n/a |
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| Training set Taxonomy | #main/Training set Taxonomy | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 4 | Classify.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.39.5.0 |
| 5 | Remove.lineage | toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_lineage/mothur_remove_lineage/1.39.5.0 |
| 6 | Summary.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.39.5.0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
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| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
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| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
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| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
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| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
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| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
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| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
|
Version History
master
Creators and Submitter
Views: 47 Downloads: 6 Runs: 0
Created: 2nd Jun 2025 at 10:52
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Teams: Galaxy Training Network
Organizations: Galaxy
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