https://orcid.org/0000-0001-8650-7248
Hi! I'm Russell.
I'm a microbiologist who uses graph theory and machine learning to study the relationships that bacteria and archaea form with their host organisms, and lately giant viruses and their hosts. Or, I'm a computer scientist who builds software that uses concepts from evolution to extract knowledge about ecology from large datasets. Or, I'm a data scientist who uses Python to explore biological systems. Or, I'm a physicist that went rouge and defected to the squishy side of science. ...
Estimate a phylogenetic tree from whole genome sequencing data for M. tuberculosis
Associated Tutorial
This workflows is part of the tutorial Tree thinking for tuberculosis evolution and epidemiology, available in the GTN
Thanks to...
Tutorial Author(s): Christoph Stritt, ...
From Fastqs to VCFs and BAMs
Associated Tutorial
This workflows is part of the tutorial Identifying tuberculosis transmission links: from SNPs to transmission clusters, available in the GTN
Thanks to...
Tutorial Author(s): Galo A. Goig, [Daniela ...
Given a set of VCF files and the reference genome used to do the mapping and SNP calling, create a multifasta file containing the genomes of all samples and calculate the matrix of pairwise SNP distances
Associated Tutorial
This workflows is part of the tutorial Identifying tuberculosis transmission links: from SNPs to transmission clusters, available in the GTN ...
Starting from the BAM files produced by snippy, generate a table that summarizes the drug-resistance profile for each sample
Associated Tutorial
This workflows is part of the tutorial Identifying tuberculosis transmission links: from SNPs to transmission clusters, available in the GTN
Thanks to...
Tutorial Author(s): [Galo A. ...
Tree building for "Phylogenetics - Back to basics"
Associated Tutorial
This workflows is part of the tutorial Phylogenetics - Back to basics, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Helena ...
