Laura Najera Cortazar
SEEK ID: https://workflowhub.eu/people/799
Location:
Portugal
ORCID:
https://orcid.org/0000-0001-8650-7248
Joined: 23rd Jul 2024
Expertise: Molecular Biology, phylogenetics, evolution
Tools: Databases, Genomics, Genetic analysis
Roles
Their tagsRelated items
Welcome to the iBOL Europe Space!
Here we collect, curate and develop SOPs and pipelines to extract, sequence, assemble and publish DNA barcodes, genome skims and DNA metabarcodes for all eukaryotic life.
For fresh sample barcoding head to our Barcoding Team
For museum specimen genome skimming head to our Museum Skimming Team
For barcode data wrangling head to our Barcode Data Team ...
Teams: iBOL Europe Museum Skimming, iBOL Europe Metabarcoding, iBOL Europe Barcoding, iBOL Europe Barcode Data
Web page: https://iboleurope.org/
Biodiversity Genomics Europe, funded by Horizon Europe call HORIZON-CL6-2021-BIODIV-01-01, aims at aligning the resources and research agendas of both DNA barcoding and reference genome generation, thus opening the door for a true quantum leap in biodiversity genomics research in Europe.
Despite ground-breaking developments in both DNA barcoding and full genome sequencing, there remains a critical need to develop and strengthen functioning communities of practice ...
Teams: Vertebrate Genomes Pipelines in Galaxy, Biodiversity Genomics Europe (general)
Web page: https://biodiversitygenomics.eu/
Space: iBOL Europe
Public web page: Not specified
This is a general team for the BGE project for any members affiliated directly or indirectly with the BGE project.
To request joining this team, make sure sure your WorkflowHub institution matches one of the listed BGE partners.
Space: Biodiversity Genomics Europe (BGE)
Public web page: https://biodiversitygenomics.eu/
Start date: 1st Sep 2022
End date: 28th Feb 2026
SOP for DNA extraction and Illumina amplicon library preparation of soil core samples collected for the Case Study "Characterization of Prokaryotic and Eukaryotic Biodiversity from Soil Samples" withing the scope of BGE (Biodiversity Genomics Europe) project.
Creators: Cátia Chaves, Laura Najera Cortazar, Filipa Martins, Sten Anslan, Albano Beja-Pereira, Maria Magalhães, Ben Price
Submitter: Cátia Chaves
DownloadSOP for DNA extraction and Illumina amplicon library preparation of encapsulated water samples collected for the Case Study "Detection of Non-Indigenous Marine Species from Port Water Samples" withing the scope of BGE (Biodiversity Genomics Europe) project.
Creators: Cátia Chaves, Laura Najera Cortazar, Filipa Martins, Joana Veríssimo, Glen Dunshea, Ben Price
Submitter: Cátia Chaves
Within the Biodiversity Genomics Europe project, the "High Mountain Systems - Arthropods" case study was designed to evaluate how arthropod communities change along altitudinal gradients in seven selected mountain systems across different countries in Europe, establishing baseline sampling in mountain ranges to track biodiversity shifts associated with climate change. This SOP describes the sampling design and fieldwork methodology for retrieving arthropod bulk samples for metabarcoding analyses. ...
Creators: Laura Najera Cortazar, Sonia Ferreira, Vanessa Mata, Pedro Beja
Submitter: Laura Najera Cortazar
Within the Biodiversity Genomics Europe project, the "Ecological Restoration - Soil" case study was designed to evaluate changes in soil biodiversity during the process of ecological succession, sampling a chronosequence of replicated plots at different stages of restoration since land abandonment. The present SOP describes soil sampling under sterile and cold conditions for metabarcoding analyses. This case study involved sampling four successional stages, represented by specific vegetation types ...
Creators: Laura Najera Cortazar, Albano Beja-Pereira , Pedro Beja
Submitter: Laura Najera Cortazar
Within the Biodiversity Genomics Europe project, the "Pollinator Communities" case study was designed to evaluate pollinator diversity in urban gardens in comparison with agricultural fields, to understand the role of urban habitats for pollinator conservation. This SOP describes the sampling design and Malaise trap fieldwork to retrieve pollinator bulk samples for metabarcoding analysis. This case study involved paired sampling, choosing one large garden and one agricultural field with no more ...
Creators: Laura Najera Cortazar, Sonia Ferreira, Pedro Beja
Submitter: Laura Najera Cortazar
