Christian de Guttry
SEEK ID: https://workflowhub.eu/people/903
Location:
Switzerland
ORCID:
https://orcid.org/0000-0002-4341-1200
Joined: 27th Nov 2024
Expertise: Not specified
Tools: Not specified
Roles
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Welcome to the ERGA Space!
Here we collect, curate and develop pipelines to assemble and annotation reference-quality genomes for all eukaryotic life.
For Genome Assembly pipelines head to our Assembly Team
For Genome Annotation pipelines head to our Annotation Team
Development, discussions and issue tracking takes place in the ERGA github repo
If you would like to join ...
Teams: ERGA Assembly, ERGA Annotation, ERGA Analysis, ERGA Sampling and Sample Processing
Web page: https://www.erga-biodiversity.eu/
Curated ERGA community Standard Operating Procedures (SOPs) for reproducible sampling and sample processing of different taxa for genomic analysis.
Space: ERGA
Public web page: https://www.erga-biodiversity.eu/
ROR ID: https://ror.org/002n09z45
Department: Environmental Bioinformatics
Country: Switzerland
City: Lausanne
Web page: https://www.sib.swiss
This SOP standardises how to collect, extract, document, and preserve marine microscopic/meiofaunal/interstitial animals for genomic research. It covers the full pipeline from pre-collection planning (permits, logistics, safety, vouchering and repository coordination) through field sampling, lab extraction and sorting, identification and imaging, and DNA/RNA preparation via snap-freezing or other preservatives. Because whole specimens are usually consumed for sequencing, the SOP emphasises metadata ...
Creators: Torsten Hugo Struck, Sara Dessi, Giulia Casula, Ana Teresa Capucho, Christian de Guttry, We acknowledge the ERGA SSP Committee for their help in organising the SOP workflow and consolidating inputs from contributors.
Submitter: Christian de Guttry
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