Workflows
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scRNAvigator: Interactive exploration, processing, and analysis of your scRNA-seq data
This collection of R notebooks has been designed to guide you through processing and analysing your single cell RNA (scRNA) sequencing data. They are designed to be worked through in the following order:
- Quality control
- Doublet detection
- Dataset integration
- Cell annotation
- Pseudobulking and differential gene expression analysis
- Pathway enrichment analyses.
Each notebook explains what is ...
Type: Quarto Markdown
Creators: Michael Geaghan, Frederick Jaya, Mitchell J O'Brien, Georgina Samaha, We thank Martyn Bullock and Sumathy Perampalam for their testing support, feedback, and providing data used in developing this workflow
Submitter: Frederick Jaya
A rapid and portable workflow for pond-side sequencing of bacterial pathogens for sustainable aquaculture using ONT long-read sequencing.
Type: Nextflow
Creators: Georgina Samaha, Francisca Samsing, Mitchell J O'Brien, Frederick Jaya
Submitter: Georgina Samaha
