The Sydney Informatics Hub is a Core Research Facility of The University of Sydney. We work towards enabling excellence in data and compute intensive research. We provide support, training, and expertise in statistics, data science, artificial intelligence, bioinformatics, software engineering, simulation, visualisation, and research computing. We are creating reusable workflows for bioinformatics on Australia's national supercompute resources & commercial cloud, as an official node of the ...

scRNAvigator: Interactive exploration, processing, and analysis of your scRNA-seq data

This collection of R notebooks has been designed to guide you through processing and analysing your single cell RNA (scRNA) sequencing data. They are designed to be worked through in the following order:

1. Quality control
2. Doublet detection
3. Dataset integration
4. Cell annotation
5. Pseudobulking and differential gene expression analysis
6. Pathway enrichment analyses.

Each notebook explains what is ...

A rapid and portable workflow for pond-side sequencing of bacterial pathogens for sustainable aquaculture using ONT long-read sequencing.