Example showing how to interact with the public bioimaging resources like the Image Data Resource (IDR)

Collection of EC-Earth3 workflows running with Autosubmit 3, with and without task wrappers, for different Slurm-based HPC platforms. See the individual descriptions for further details.

Collections of materials used as part of the Data Steward Curriculum

https://github.com/crim-ca/application-packages

Common Workflow Language definitions that can be employed in the context of OGC API - Processes deployment. Open Geospatial Consortium (OGC) API Processes can leverage CWL to integrate worklows and processes.

Open source Web API bridging OGC API - Processes with CWL by the Computer Research Institute of Montreal / Centre de recherche informatique de Montréal (CRIM): https://github.com/crim-ca/weaver

Collection of workflows exploring data in the Image Data Resource (IDR).

Open Work Flow Articles (OWFAs)

This is an inclusive collection of workflows related to biodiversity and ecology (especially non-microbial). A big portion covers genome assembly of newly-sequenced species, using long reads (ONT or PacBio HiFi), possibly complemented by chromosome capture (typically HiC) for scaffolding, or/and by short reads (typically Illumina). It also aims at collating workflows related to ecology, biodiversity, biogeography, natural history, and related scientific areas, across the whole WorkflowHub and ...

A collection of image processing templates designed to support data collection and automated processing for Single Particle Analysis (SPA) in cryo-electron microscopy. The workflows range from simple pipelines—including movie alignment, CTF estimation, and quality assessment—to fully automated 2D and 3D processing. Please select the workflow that best suits your needs.

EuCanImage FHIR ETL Implementation

This repository contains the ETL implementation for EuCanImage, encouraging semantic interoperability of the clinical data obtained in the studies by transforming it into a machine-readable format following FHIR standards. This parser uses FHIR Resources in order to create the dictionaries following a FHIR compliant structure.

• Code Language is written in Python 3.11. ...