Barcode Gene Extractor & Evaluator (BGEE) Snakemake workflow
Snakemake workflow for recovering high-quality barcode sequences from genome skim data, built around MitoGeneExtractor and adapted for genome skims of museum specimens.
Contents
Library curation BOLD
This repository contains scripts and synonymy data for pipelining the automated curation of BOLD data dumps in BCDM TSV ...
Type: Snakemake
Creators: Rutger Vos, Fabian Deister, Ben Price, Special thanks to Sujeevan Ratnasingham and the team at CBG for the creation of the BCDM data exchange format that this pipeline operates on
Submitter: Rutger Vos
This is an inclusive collection of workflows related to biodiversity and ecology (especially non-microbial). A big portion covers genome assembly of newly-sequenced species, using long reads (ONT or PacBio HiFi), possibly complemented by chromosome capture (typically HiC) for scaffolding, or/and by short reads (typically Illumina). It also aims at collating workflows related to ecology, biodiversity, biogeography, natural history, and related scientific areas, across the whole WorkflowHub and ...
Maintainers: Matúš Kalaš, Keiler Collier
Number of items: 29
Tags: Biodiversity, Ecology, Genome assembly, dna barcoding, natural history collections
