SMIntegration : Spatial Multi-omics Integration Platform

Introduction

SMIntegration is an innovative open-source platform for integrated analysis of spatial transcriptomics and metabolomics data. It integrates spatial pattern recognition, differential comparison, network construction, and functional annotation into a unified workflow. Designed to address key challenges in spatial multi-omics correlation analysis, SMIntegration enables researchers to explore gene-metabolite co-regulation ...

nf-CBRA-snvs

nf-CBRA-snvs (nf-core - CIBERER Bioinformatics for Rare diseases Analysis - Small Nucleotide Variant) is a workflow optimized for the analysis of rare diseases, designed to detect SNVs and INDELs in targeted sequencing data (CES/WES) as well as whole genome sequencing (WGS).

This pipeline is developed using Nextflow, a workflow management system that enables an easy execution across various computing environments. It uses Docker or Singularity containers, simplifying setup and ...

EC-Earth3 workflow without wrappers running in MeluXina with Autosubmit v3.15.14, used to assess the effects of task aggregation on queueing times. Workflow configuration is based on the Auto-EC-Earth3's testing suite [1].

In order to reduce the size of the workflow, files in the /tmp directory have been deleted. Additionally, the experiment has been cleaned up with the Autosubmit clean ...

EC-Earth3 workflow with wrappers running in MeluXina with Autosubmit v3.15.14, used to assess the effects of task aggregation on queueing times. Workflow configuration is based on the Auto-EC-Earth3's testing suite [1].

In order to reduce the size of the workflow, files in the /tmp directory have been deleted. Additionally, the experiment has been cleaned up with the Autosubmit clean command. ...

EC-Earth3 workflow without wrappers running in MareNostrum 5 with Autosubmit v3.15.18, used to assess the effects of task aggregation on queueing times. Workflow configuration is based on the Auto-EC-Earth3's testing suite [1].

In order to reduce the size of the workflow, files in the /tmp directory have been deleted. Additionally, the experiment has been cleaned up with the Autosubmit clean ...

EC-Earth3 workflow with wrappers running in MareNostrum 5 with Autosubmit v3.15.18, used to assess the effects of task aggregation on queueing times. Workflow configuration is based on the Auto-EC-Earth3's testing suite [1].

In order to reduce the size of the workflow, files in the /tmp directory have been deleted. Additionally, the experiment has been cleaned up with the Autosubmit clean ...

EC-Earth3 workflow without wrappers running in MareNostrum 4 with Autosubmit v3.15.0b0, used to assess the effects of task aggregation on queueing times. Workflow configuration is based on the Auto-EC-Earth3's testing suite [1].

In order to reduce the size of the workflow, files in the /tmp directory have been deleted. Additionally, the experiment has been cleaned up with the Autosubmit clean ...

EC-Earth3 workflow with wrappers running in MareNostrum 4 with Autosubmit v3.15.0b0, used to assess the effects of task aggregation on queueing times. Workflow configuration is based on the Auto-EC-Earth3's testing suite [1].

In order to reduce the size of the workflow, files in the /tmp directory have been deleted. Additionally, the experiment has been cleaned up with the Autosubmit clean ...

...

Runs MetaPhlAn 4 and HUMAnN 3

• Optional short read quality control workflow (https://workflowhub.eu/workflows/336)
• Includes renormalizing and all regroupings to other functional categories (EC,KO.. etc)

Required inputs are paired end reads and databases.

Other UNLOCK workflows on WorkflowHub: \ https://workflowhub.eu/projects/16/workflows?view=default

Tool CWL files and other workflows can be found at:\ https://gitlab.com/m-unlock/cwl