SOPs

The EuroScienceGateway project is producing and maintaining workflows. We need to register those workflows in WorkflowHub:

• To give visibility to the workflows created by the project and by the different networks and communities within the project
• To give visibility to the workflows used by project that were created
• To share workflows across the project, within project networks and externally
• To credit and cite the people making the workflows and the ...

This workflow uses a slightly modified version of the Santa Cruz Reaction (SCR) protocol by Kapp et al. 2021 for library building of museum specimens. The reaction volumes can be halved to reduce reagent costs, lower volumes have not been tested yet. Please cite the original publication if using this method: https://doi.org/10.1093/jhered/esab012

This SOP standardises how to collect, extract, document, and preserve marine microscopic/meiofaunal/interstitial animals for genomic research. It covers the full pipeline from pre-collection planning (permits, logistics, safety, vouchering and repository coordination) through field sampling, lab extraction and sorting, identification and imaging, and DNA/RNA preparation via snap-freezing or other preservatives. Because whole specimens are usually consumed for sequencing, the SOP emphasises metadata ...

Based off the International Barcode of Life microplate instructions, with permission of iBOL (https://ibol.org/).

Tutorial and specification for packaging IEEE 2791-2020 (BioCompute Objects/BCOs) as RO-Crate Research Objects.

BioCompute Object (BCO) is a standard (IEEE 2791-2020) for describing computational workflows for regularory submission, e.g. a genomics workflow as part of personalized medicine.

RO-Crate is a community-based specification for research data packaging of Research Objects with rich metadata, based on open standards and vocabularies like JSON-LD and schema.org.

BCO RO-Crate is the combination ...