scRNAvigator: Interactive exploration, processing, and analysis of your scRNA-seq data
This collection of R notebooks has been designed to guide you through processing and analysing your single cell RNA (scRNA) sequencing data. They are designed to be worked through in the following order:
- Quality control
- Doublet detection
- Dataset integration
- Cell annotation
- Pseudobulking and differential gene expression analysis
- Pathway enrichment analyses.
Each notebook explains what is ...
Type: Quarto Markdown
Creators: Michael Geaghan, Frederick Jaya, Mitchell J O'Brien, Georgina Samaha, We thank Martyn Bullock and Sumathy Perampalam for their testing support, feedback, and providing data used in developing this workflow
Submitter: Frederick Jaya
SeuratExtend: An Enhanced Toolkit for scRNA-seq Analysis
Overview
SeuratExtend is an R package designed to provide an improved and easy-to-use toolkit for scRNA-seq analysis and visualization, built upon the Seurat object. While Seurat is a widely-used tool in the R community that offers a foundational framework for scRNA-seq analysis, it has limitations when it comes to more advanced analysis and customized visualization. SeuratExtend expands upon Seurat by offering an array of
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