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The ATLASea programme aims to build a comprehensive reference atlas of marine eukaryotic genomes from species found across the French metropolitan and overseas exclusive economic zones. By combining specimen collection, taxonomic identification, high-throughput sequencing, genome assembly and annotation, the programme will provide genomic resources for the study, monitoring and conservation of marine biodiversity.

We develop and maintain bioinformatics software and reproducible computational ...

This is an inclusive collection of workflows related to biodiversity and ecology (especially non-microbial). A big portion covers genome assembly of newly-sequenced species, using long reads (ONT or PacBio HiFi), possibly complemented by chromosome capture (typically HiC) for scaffolding, or/and by short reads (typically Illumina). It also aims at collating workflows related to ecology, biodiversity, biogeography, natural history, and related scientific areas, across the whole WorkflowHub and ...