Jupyter Notebook Haddock3 Protein-Protein Docking
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Protein-protein Docking tutorial using HADDOCK with the BioExcel Building Blocks (biobb)

Based on the official HADDOCK3 Antibody-antigen modelling tutorial.


This tutorial aims to illustrate the process of protein-protein docking, step by step, using HADDOCK3 with the BioExcel Building Blocks library (biobb). The particular systems used in this tutorial are the Interleukin-1β (IL-1β) antigen (PDB code 4I1B) and the gevokizumab antibody (PDB code 4G6K). The complex is also available under the PDB code 4G6M.


Copyright & Licensing

This software has been developed in the MMB group at the BSC & IRB for the European BioExcel, funded by the European Commission (EU Horizon Europe 101093290, EU H2020 823830, EU H2020 675728).

Licensed under the Apache License 2.0, see the file LICENSE for details.

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Version 1 (earliest) Created 26th Mar 2026 at 15:04 by Genís Bayarri

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Bayarri, G., & Hospital, A. (2026). Jupyter Notebook Haddock3 Protein-Protein Docking. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.2136.1
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Created: 26th Mar 2026 at 15:04

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