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chemfp2 MultiQC67 SAMtools59 FastQC58 fastp51 BUSCO35 BWA34 Minimap232 anndata27 Bowtie 227 Cutadapt26 BEDTools24 SCANPY24 BCFtools22 ggplot222 Bandage21 kraken220 BLAST19 QUAST19 gfastats17 Merqury16 Bwa-mem215 taxonomy_krona_chart15 JBrowse14 seqtk14 SRA Software Toolkit14 MACS13 scikit-learn13 BamTools12 GenomeScope 2.012 gffread12 NanoPlot12 STAR12 Trimmomatic12 FASTX-Toolkit11 FreeBayes11 mothur11 StringTie11 DeepTools10 Flye10 Open Babel10 DESeq29 Galaxy Image Analysis9 HISAT29 lofreq9 MaxQuant9 Stacks9 Trim Galore9 UniProt9 msConvert8 R8 scikit-image8 Unicycler8 Biopython7 bx-python7 Galaxy7 MaBoSS7 MAFFT7 PhysiCell7 purge_dups7 Racon7 RSeQC7 shovill7 snpEff7 GEMINI6 Gromacs6 KrakenTools6 MuSiC Deconvolution6 QualiMap6 RDKit6 RepeatMasker6 Seurat6 TransDecoder6 vardict6 Vcflib6 antiSMASH5 Bracken5 compleasm5 DropletUtils5 FeatureCounts5 GOseq5 iqtree5 Konstanz Information Miner (KNIME)5 Medaka5 MEGAHIT5 Scipion5 seqkit5 SPAdes5 Unipept5 annotatemyids4 CellProfiler4 Clustal 2 (Clustal W, Clustal X)4 COMBAT-TB Workbench4 Cufflinks4 Diamond4 funannotate4 Galactic Circos4 gffcompare4 InterProScan (EBI)4 Meryl4 MSstats4 Newick Utilities4 NGSUtils4 PretextView4 Salmon4 Smudgeplots4 snippy4 Workflow4Metabolomics4 xcms4 ABRicate3 AmberTools3 Bakta3 Cardinal3 ChiRA3 cisTEM3 compute_sequence_length3 eggNOG-mapper v23 Falco3 FastTree3 HiCExplorer3 HUMAnN23 Infernal3 MAKER3 MAPseq3 MetaNovo3 MetaPhlAn3 metaspades3 MotionCor23 MSstatsTMT3 Nextflow3 OMArk3 picard_samtofastq3 Prokka3 pyGenomeTracks3 Recentrifuge3 SeqCode3 staramr3 tb-profiler3 ToolDistillator3 UMI-tools3 VarScan3 Variant Effect Predictor (VEP)3 YaHS3 AutoDock2 AutoDock Vina2 BBMap2 bed to protein map2 Bio3D2 BioContainers2 biomformat2 BRAKER12 cBioPortal2 CheckM2 ChEMBL2 ChemicalToolbox2 Clair32 clusterProfiler2 CNVkit2 CoverM2 cshl_fastx_reverse_complement2 customProDB2 edgeR2 EGA2 epiScanpy2 FEELnc2 Filtlong2 GATK2 GOEnrichment2 Helixer2 Hifiasm2 humann2 Integron Finder2 ISEScan2 iVar2 limma2 Matchms2 MaxBin2 MDAnalysis2 MEME2 MetaBAT 22 metaQuantome2 MFAssignR2 miniasm2 nanopolish2 NCBI Datasets2 NCBI Resources2 OBITools2 P2Rank2 The Protein Data Bank (PDB)2 Picard2 pilon2 PlasmidFinder2 PredPrIn2 PRINSEQ2 Prodigal2 Proteinortho2 QIIME2 RepeatModeler2 sceasy2 Scipion-chem2 SemiBin2 Snakemake2 SnapATAC2 SnpSift2 SuCOS2 tbl2gff32 tophat22 VADR2 vcfanno2 vcfutils2 VSEARCH2 XMIPP2 AdapterRemoval1 AGAT1 ampvis1 AnnotSV1 Apollo1 AUGUSTUS1 AutoSite1 Binette1 Bioconductor1 BlobToolKit1 blockbuster1 Bowtie1 BRAKER31 CARNIVAL1 ChIPpeakAnno1 Circos1 Clustal 1.8 (Clustal W, Clustal X)1 cmsearch-deoverlap1 CONCOCT1 cuffdiff1 dada21 dastool1 decoupleR1 DeepVariant1 Delly21 diaPASEF1 dRep1 EGSEA1 EMBOSS1 European Nucleotide Archive (ENA)1 ete1 ewastools1 export2graphlan1 FGENESH1 fgsea1 FLASH1 FlashLFQ1 Foldseek1 Fpocket1 FREEC1 GADES1 GAEVAL1 gblocks1 GBMatch - GBMPredictor1 GECKO1 GetOrganelle1 ggtree1 g:Profiler1 GraPhlAn1 GSEA1 GTDB-Tk1 hAMRonization1 Heinz1 HiFiAdapterFilt1 htseqcount1 HTSlib1 The Immune Epitope Database (IEDB)1 ImageJ21 IsoformSwitchAnalyzeR1 IWTomics1 JBrowse 21 kraken-biom1 Krona1 LASTZ1 lotus21 MAGeCK1 MALDIquant1 Mash1 MethylDackel1 miniprot1 miRDeep21 MitoHiFi1 MITOS1 MOB-suite1 MolMeDB1 Metagenomic operational taxonomic units (mOTUs)1 MSMetaEnhancer1 multiGSEA1 MUMmer1 mzToSQLite1 ngsReports1 OptiType1 pangolin1 pathview1 Peakachu1 PEAR1 PfamScan1 phyloseq1 PhysiBoSS1 PlasFlow1 PLINK1 Polypolish1 progeny1 protexcluder1 PubMed1 pyfastaq1 PyTorch1 qcxms1 QuickTree1 RaceID1 RAMClustR1 RapidNJ1 RAxML1 RCAS1 recetox-msfinder1 RED1 RepeatModeler1 RIAssigner1 rnaQUAST1 SALSA1 scater1 Seq2HLA1 SeqSero21 sinto1 SISTR1 SNAP1 snipit1 SortMeRNA1 Subread1 tabix1 Targetfinder.org1 TaxonKit1 TRANSIT1 trimAl1 Trinity1 Trinotate1 TSSr1 UCSC Genome Browser Utilities1 VAPOR1 varlociraptor1 varVAMP1 VelvetOptimiser1 WGCNA1 WoLF PSORT1 xtb1 More...

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