Workflows

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440 Workflows visible to you, out of a total of 541
GTN - Sequence Analyses - Mapping - Jbrowse (imported from uploaded file)

Mapping

Associated Tutorial

This workflows is part of the tutorial GTN - Sequence Analyses - Mapping - Jbrowse (imported from uploaded file), available in the GTN

Thanks to...

Tutorial Author(s): Joachim Wolff, [Bérénice ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

GBIF data Quality check and filtering workflow Feb-2020

Cleaning GBIF data for the use in Ecology

Associated Tutorial

This workflows is part of the tutorial GBIF data Quality check and filtering workflow Feb-2020, available in the GTN

Thanks to...

Tutorial Author(s): Yvan Le Bras, [Simon ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

scRNA Plant Analysis

Downstream Single-cell RNA Plant analysis with ScanPy

Associated Tutorial

This workflows is part of the tutorial scRNA Plant Analysis, available in the GTN

Thanks to...

Tutorial Author(s): Mehmet Tekman, Beatriz Serrano-Solano, ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

GTN_Exemplar_002_TMA_workflow

End-to-End Tissue Microarray Analysis with Galaxy-ME

Associated Tutorial

This workflows is part of the tutorial GTN_Exemplar_002_TMA_workflow, available in the GTN

Thanks to...

Tutorial Author(s): Cameron Watson, [Allison ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

GTN - Sequence Analyses - Mapping (imported from uploaded file)

Mapping

Associated Tutorial

This workflows is part of the tutorial GTN - Sequence Analyses - Mapping (imported from uploaded file), available in the GTN

Features

Thanks to...

Tutorial Author(s): [Joachim ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

preparing genomic data for phylogeny recostruction (GTN)

This workflow begins from a set of genome assemblies of different samples, strains, species. The genome is first annotated with Funnanotate. Predicted proteins are furtner annotated with Busco. Next, 'ProteinOrtho' finds orthologs across the samples and makes orthogroups. Orthogroups where all samples are represented are extracted. Orthologs in each orthogroup are aligned with ClustalW. The alignments are cleaned with ClipKIT and the concatenation matrix is built using PhyKit. This can be used ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

Generating a single cell matrix using Alevin

This workflow generates a single cell matrix using Alevin.

Associated Tutorial

This workflows is part of the tutorial Generating a single cell matrix using Alevin, available in the GTN

Features

Thanks to...

**Tutorial ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

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