Workflows

What is a Workflow?
440 Workflows visible to you, out of a total of 541

Nucleoli segmentation and feature extraction using CellProfiler

Associated Tutorial

This workflows is part of the tutorial CP_pipeline_IDR_training, available in the GTN

Thanks to...

Tutorial Author(s): Beatriz Serrano-Solano, [Jean-Karim ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

This workflow creates an ESet object from scRNA metadata file and EBI SCXA retrieveal

Associated Tutorial

This workflows is part of the tutorial MuSiC-Deconvolution: Data generation | sc | matrix + ESet, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: Helena Rasche

Visualization of Climate Data using NetCDF Xarray Map Plotting

Associated Tutorial

This workflows is part of the tutorial Xarray_Map_Plotting_Workflow, available in the GTN

Thanks to...

Tutorial Author(s): Soumya Jha

Workflow Author(s): Soumya Jha ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

This workflow generates from only an EBI SCXA reference the metadata for creating an ESet object

Associated Tutorial

This workflows is part of the tutorial MuSiC-Deconvolution: Data generation | sc | metadata, available in the GTN

Thanks to...

Tutorial Author(s): Wendi Bacon, ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

Compute indicators for Champs blocs

Associated Tutorial

This workflows is part of the tutorial Champs blocs indicators, available in the GTN

Thanks to...

Tutorial Author(s): Marie Josse, Yvan Le Bras ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

AnnData to Seurat format conversion (manually using Galaxy buttons)

Associated Tutorial

This workflows is part of the tutorial AnnData to Seurat conversion, available in the GTN

Features

Thanks to...

**Tutorial ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

example cellprofiler pipeline

Associated Tutorial

This workflows is part of the tutorial CP_object_tracking_example, available in the GTN

Thanks to...

Tutorial Author(s): Yi Sun, Beatriz Serrano-Solano, ...

Type: Galaxy

Creators: None

Submitter: Helena Rasche

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