EncyclopeDIA-GTN
Visit source
Download RO-Crateencyclopedia
Associated Tutorial
This workflows is part of the tutorial May19 EncyclopeDIA raw inputs, available in the GTN
Thanks to...
Tutorial Author(s): Emma Leith, Subina Mehta, James Johnson, Pratik Jagtap, Timothy J. Griffin
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| BACKGROUND PROTEIN FASTA FILE | #main/BACKGROUND PROTEIN FASTA FILE | n/a |
|
| EXPERIMENTAL DIA mzML FILES (WIDE) | #main/EXPERIMENTAL DIA mzML FILES (WIDE) | n/a |
|
| GPF DIA mzML Files (Dataset collection) | #main/GPF DIA mzML Files (Dataset collection) | encyclopedia |
|
| SPECTRAL OR PROSIT LIBRARY | #main/SPECTRAL OR PROSIT LIBRARY | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 4 | msconvert | toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert/msconvert/3.0.20287.2 |
| 5 | msconvert | toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert/msconvert/3.0.20287.2 |
| 6 | SearchToLib | toolshed.g2.bx.psu.edu/repos/galaxyp/encyclopedia_searchtolib/encyclopedia_searchtolib/1.2.2+galaxy0 |
| 7 | EncyclopeDIA Quantify | toolshed.g2.bx.psu.edu/repos/galaxyp/encyclopedia_quantify/encyclopedia_quantify/1.2.2+galaxy0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
|
| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
|
| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
|
| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
|
| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
|
Version History
2.0 (latest) Created 9th Sep 2024 at 14:23 by Helena Rasche
Added/updated 4 files
Open
mastere1af47d
4.0 (earliest) Created 25th Jun 2024 at 11:03 by Helena Rasche
Added/updated 4 files
Frozen
4.0144d8a5
Creators and Submitter
Views: 743 Downloads: 247
Created: 25th Jun 2024 at 11:03
Last updated: 9th Sep 2024 at 14:23
Tags AttributionsNone
Related items
https://orcid.org/0000-0001-9760-8992
Teams: Testing, Finn's test team, PNDB, LifeMonitorDev, iPC: individualizedPaediatricCure, test, Test Team, Australian BioCommons Dev, opscientia, V-pipe, UX study leave, DALiuGE workflows, Team1, UX study, My Fancy Team, Team UX Study11, My team, ux study team, UX study koehorst, Team Koehorst, UX Study (satra), Steve's UX Study Test Team, TestSaandra, KJ-workflow-test, NewTeam, team, UXStudy, A Team, UX study K, UXStudy99, Study team, Another new team, UX study2, Team 20220225, my new team, UX Study AU, Testing_proteomics, A test space (KKH), Pleiade, QSM4SENIOR, IGG-Bioinfo, Defragmentation training school, FWCC-D@HZDR, Submission Tutorial, Testing team, Galaxy Training Network, Exploring SEEK SOP functionality, MyTest, Tsinghua University BCI group, Test Team Number Nine, Eli's test team, EMBL Bioimage analysis service, Hu's Test
Web page: Not specified
Space: General
Public web page: https://galaxy.training
