Apollo Load Test

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Workflow Type: Galaxy

Refining Genome Annotations with Apollo

Associated Tutorial

This workflows is part of the tutorial Apollo Load Test, available in the GTN

Thanks to...

Tutorial Author(s): Anthony Bretaudeau, Helena Rasche, Nathan Dunn, Mateo Boudet

Funder(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health, EuroScienceGateway

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1190?version=2

Inputs

ID Name Description Type
Amel_4.5_scaffolds.fa.gz #Amel_4.5_scaffolds.fa.gz n/a
  • File
amel_OGSv3.2.gff3.gz #amel_OGSv3.2.gff3.gz n/a
  • File
forager.bw #forager.bw n/a
  • File
forager_Amel4.5_accepted_hits.bam #forager_Amel4.5_accepted_hits.bam n/a
  • File

Steps

ID Name Description
4 Register Account toolshed.g2.bx.psu.edu/repos/gga/apollo_create_account/create_account/3.1
5 List Organisms toolshed.g2.bx.psu.edu/repos/gga/apollo_list_organism/list_organism/3.1
6 JBrowse toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1
7 Create or Update Organism toolshed.g2.bx.psu.edu/repos/gga/apollo_create_or_update/create_or_update/4.2.5
8 Annotate toolshed.g2.bx.psu.edu/repos/gga/apollo_iframe/iframe/4.2.5

Outputs

ID Name Description Type
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

1.0 (latest) Created 16th Jul 2024 at 14:05 by Helena Rasche

Added/updated 4 files


Open master c92f85a

3.0 (earliest) Created 25th Jun 2024 at 11:08 by Helena Rasche

Added/updated 4 files


Frozen 3.0 2bcf1d6
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
Apollo
JBrowse
License
Creative Commons Attribution 4.0 International
Activity

Views: 605   Downloads: 194

Created: 25th Jun 2024 at 11:08

Last updated: 25th Jun 2024 at 11:08

help Attributions

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Total size: 72.7 KB
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