This workflow allows you to annotate a genome with Helixer and evaluate the quality of the annotation using BUSCO and Genome Annotation statistics. GFFRead is also used to predict protein sequences derived from this annotation, and BUSCO and OMArk are used to assess proteome quality.

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Helixer, available ...

Structural and functional genome annotation with Funannotate

Associated Tutorial

This workflows is part of the tutorial Funannotate, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Anthony ...

Masking repeats in a genome using RepeatMasker

Associated Tutorial

This workflows is part of the tutorial RepeatMasker, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Anthony ...

Genome annotation with Maker (short)

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Maker (short), available in the GTN

Thanks to...

Tutorial Author(s): Anthony Bretaudeau

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Refining Genome Annotations with Apollo

Associated Tutorial

This workflows is part of the tutorial Apollo Load Test, available in the GTN

Thanks to...

Tutorial Author(s): Anthony Bretaudeau, Helena Rasche, ...

Genome annotation with Prokka

Associated Tutorial

This workflows is part of the tutorial Genome Annotation with Prokka , available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Anna ...

Functional annotation of protein sequences

Associated Tutorial

This workflows is part of the tutorial Functional annotation, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Anthony ...

CRISPR screen analysis

Associated Tutorial

This workflows is part of the tutorial Workflow constructed from history 'CRISPR tutorial Kenji', available in the GTN

Thanks to...

Tutorial Author(s): Maria Doyle, [Kenji ...

Workflows for comparison of genes in annotated genomes

Associated Tutorial

This workflows is part of the tutorial Comparative gene analysis, available in the GTN

Thanks to...

Tutorial Author(s): Anton Nekrutenko

Workflow Author(s): Anton Nekrutenko

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Identification of AMR genes in an assembled bacterial genome

Associated Tutorial

This workflows is part of the tutorial mrsa AMR gene detection, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): ...

Genome annotation with Maker

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Maker , available in the GTN

Thanks to...

Tutorial Author(s): Anthony Bretaudeau

Workflow Author(s): Anthony Bretaudeau, French ...

A workflow designed to compare two sequences using GECKO, extract repeats and perform multiple sequence alignment

Associated Tutorial

This workflows is part of the tutorial GECKO pairwise comparison, available in the GTN

Thanks to...

Tutorial Author(s): Esteban Perez-Wohlfeil ...

A workflow designed to compare chromosomes and study large-scale rearrangements using CHROMEISTER

Associated Tutorial

This workflows is part of the tutorial CHROMEISTER chromosome comparison, available in the GTN

Thanks to...

Tutorial Author(s): Esteban Perez-Wohlfeil ...

Essential genes detection with Transposon insertion sequencing

Associated Tutorial

This workflows is part of the tutorial Essential genes detection with Transposon insertion sequencing, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks

...

Long non-coding RNAs (lncRNAs) annotation with FEELnc

Associated Tutorial

This workflows is part of the tutorial Long non-coding RNAs (lncRNAs) annotation with FEELnc, available in the GTN

Thanks to...

Tutorial Author(s): Stéphanie Robin

**Tutorial ...

Bacterial Genome Annotation

Associated Tutorial

This workflows is part of the tutorial Bacterial Genome Annotation, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Bérénice Batut, ...