RepeatMasker
1.0

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Workflow Type: Galaxy

Masking repeats in a genome using RepeatMasker

Associated Tutorial

This workflows is part of the tutorial RepeatMasker, available in the GTN

Features

Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): Anthony Bretaudeau, Alexandre Cormier, Laura Leroi, Erwan Corre, Stéphanie Robin, Jonathan Kreplak

Workflow Author(s): Anthony Bretaudeau

Funder(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health, EuroScienceGateway

SEEK ID: https://dev.workflowhub.eu/workflows/1198?version=1

Inputs

ID	Name	Description	Type
Raw genome sequence	#main/Raw genome sequence	The raw (not masked) genome sequence in fasta format	File

Steps

ID	Name	Description
1	Red	toolshed.g2.bx.psu.edu/repos/iuc/red/red/2018.09.10+galaxy1
2	RepeatMasker	toolshed.g2.bx.psu.edu/repos/bgruening/repeat_masker/repeatmasker_wrapper/4.1.5+galaxy0

Outputs

ID	Name	Description	Type
RepeatMasker masked sequence on input dataset(s)	#main/RepeatMasker masked sequence on input dataset(s)	n/a	File
RepeatMasker output log on input dataset(s)	#main/RepeatMasker output log on input dataset(s)	n/a	File
RepeatMasker repeat catalogue on input dataset(s)	#main/RepeatMasker repeat catalogue on input dataset(s)	n/a	File
RepeatMasker repeat statistics on input dataset(s)	#main/RepeatMasker repeat statistics on input dataset(s)	n/a	File
_anonymous_output_1	#main/_anonymous_output_1	n/a	File
_anonymous_output_2	#main/_anonymous_output_2	n/a	File

Version History

1.0 (earliest) Created 25th Jun 2024 at 11:09 by Helena Rasche

Added/updated 4 files

Open master c7d8c42

Creators and Submitter

Creators

Not specified

Submitter

Helena Rasche

Discussion Channel

GTN Matrix

Tools

RED

RepeatMasker

License

GNU General Public License v3.0 or later

Activity

Views: 435 Downloads: 100

Created: 25th Jun 2024 at 11:09

Last updated: 25th Jun 2024 at 11:09

RepeatMasker 1.0