Workflow Type: Galaxy
Open
Associated Tutorial
This workflows is part of the tutorial Ecoregionalization workflow tutorial, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Uses Galaxy Workflow Comments
Thanks to...
Workflow Author(s): Seguineau Pauline
Tutorial Author(s): Pauline Seguineau
Tutorial Contributor(s): Yvan Le Bras, Marie Josse, Ankerl Yassine
Inputs
ID | Name | Description | Type |
---|---|---|---|
ceamarc_env.tsv | ceamarc_env.tsv | n/a |
|
occurrence.txt | occurrence.txt | n/a |
|
pivot_wider_jupytool_notebook.ipynb | pivot_wider_jupytool_notebook.ipynb | n/a |
|
Steps
ID | Name | Description |
---|---|---|
3 | Advanced Cut | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy1 |
4 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.3 |
5 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.3 |
6 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.3 |
7 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.3 |
8 | Filter Tabular | toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/3.3.0 |
9 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.3 |
10 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.3 |
11 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.3 |
12 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.3 |
13 | Column Regex Find And Replace | toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.3 |
14 | Merge Columns | toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.2 |
15 | Advanced Cut | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy1 |
16 | Interactive JupyTool and notebook | interactive_tool_jupyter_notebook |
17 | GeoNearestNeighbor | toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_geonearestneighbor/ecoregion_GeoNearestNeighbor/0.1.0+galaxy0 |
18 | BRT tool prediction | toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_brt_analysis/ecoregion_brt_analysis/0.1.0+galaxy0 |
19 | TaxaSeeker | toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_taxa_seeker/ecoregion_taxa_seeker/0.1.0+galaxy0 |
20 | ClusterEstimate | toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_cluster_estimate/ecoregion_cluster_estimate/0.1.0+galaxy0 |
21 | ClaraClust | Please ensure that the parameter 'Number of Clusters Wanted' reflects your actual desired number. To determine this parameter, refer to your SIH index plot from the ClusterEstimate step. toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_clara_cluster/ecoregion_clara_cluster/0.1.0+galaxy0 |
22 | EcoMap | toolshed.g2.bx.psu.edu/repos/ecology/ecoregion_eco_map/ecoregion_eco_map/0.1.0+galaxy0 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
occ_out | occ_out | n/a |
|
occ_env_out | occ_env_out | n/a |
|
info_out | info_out | n/a |
|
coll_pred | coll_pred | n/a |
|
coll_val | coll_val | n/a |
|
coll_distri | coll_distri | n/a |
|
coll_plots | coll_plots | n/a |
|
summary | summary | n/a |
|
taxa | taxa | n/a |
|
taxa_clean | taxa_clean | n/a |
|
SIH_index | SIH_index | n/a |
|
data_to_clus | data_to_clus | n/a |
|
databio_table | databio_table | n/a |
|
SIH_plot | SIH_plot | n/a |
|
cluster_points | cluster_points | n/a |
|
cluster_info | cluster_info | n/a |
|
eco_map | eco_map | n/a |
|
Version History
1.0 (earliest) Created 16th Sep 2024 at 14:07 by Helena Rasche
Added/updated 4 files
Open
master
a360288
Creators and Submitter
Creators
Not specifiedSubmitter
License
Activity
Views: 272 Downloads: 79
Created: 16th Sep 2024 at 14:07
Last updated: 16th Sep 2024 at 14:07
Attributions
None