Workflows
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Spatial Transcriptomics
Type: Nextflow
Creators: Sergii Domanskyi, Jeffrey Chuang, Anuj Srivastava
Submitter: WorkflowHub Sandbox Bot
SLAMseq analysis using Slamdunk with various T>C conversion quantifications and QC
An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing
Type: Nextflow
Creators: Maxime Garcia, Szilveszter Juhos, Friederike Hanssen
Submitter: WorkflowHub Sandbox Bot
RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control.
Type: Nextflow
Creators: Harshil Patel, Phil Ewels, Rickard Hammarén
Submitter: WorkflowHub Sandbox Bot
Alternative splicing analysis using RNA-seq.
call and score variants from WGS/WES of rare disease patients
A workflow to simulate reads